scholarly journals Real-time halo correction in phase contrast imaging

2017 ◽  
Author(s):  
Mikhail E. Kandel ◽  
Michael Fanous ◽  
Catherine Best-Popescu ◽  
Gabriel Popescu

AbstractAs a label-free, nondestructive method, phase contrast is by far the most popular microscopy technique for routine inspection of cell cultures. Yet, features of interest such as extensions near cell bodies are often obscured by a glow, which came to be known as the halo. Advances in modeling image formation have shown that this artifact is due to the limited spatial coherence of the illumination. Yet, the same incoherent illumination is responsible for superior sensitivity to fine details in the phase contrast geometry. Thus, there exists a trade-off between high-detail (incoherent) and low-detail (coherent) imaging systems. In this work, we propose a method to break this dichotomy, by carefully mixing corrected low-frequency and high-frequency data in a way that eliminates the edge effect. Specifically, our technique is able to remove halo artifacts at video rates, requiring no manual interaction ora prioripoint spread function measurements. To validate our approach, we imaged standard spherical beads, sperm cells, tissue slices, and red blood cells. We demonstrate the real-time operation with a time evolution study of adherent neuron cultures whose neurites are revealed by our halo correction. We show that with our novel technique, we can quantify cell growth in large populations, without the need for thresholds and calibration.

Author(s):  
Lisa Miccio ◽  
Flora Cimmino ◽  
Ivana Kurelac ◽  
Massimiliano M. Villone ◽  
Vittorio Bianco ◽  
...  

2020 ◽  
Vol 28 (19) ◽  
pp. 27524
Author(s):  
Amber Galeana ◽  
Rosario Porras-Aguilar
Keyword(s):  

NeuroImage ◽  
2015 ◽  
Vol 122 ◽  
pp. 281-287 ◽  
Author(s):  
Liyong Chen ◽  
Alexander Beckett ◽  
Ajay Verma ◽  
David A. Feinberg

Sensors ◽  
2018 ◽  
Vol 18 (11) ◽  
pp. 3700 ◽  
Author(s):  
Donghui Song ◽  
Haomin Liu ◽  
Qiuchen Dong ◽  
Zichao Bian ◽  
Huixiang Wu ◽  
...  

Accurately measuring the number of viable microorganisms plays an essential role in microbiological studies. Since the conventional agar method of enumerating visible colonies is time-consuming and not accurate, efforts have been made towards overcoming these limitations by counting the invisible micro-colonies. However, none of studies on micro-colony counting was able to save significant time or provide accurate results. Herein, we developed an on-glass-slide cell culture device that enables rapid formation of micro-colonies on a 0.38 mm-thick gel film without suffering from nutrient and oxygen deprivation during bacteria culturing. Employing a phase contrast imaging setup, we achieved rapid microscopic scanning of micro-colonies within a large sample area on the thin film without the need of fluorescent staining. Using Escherichia coli (E. coli) as a demonstration, our technique was able to shorten the culturing time to within 5 h and automatically enumerate the micro-colonies from the phase contrast images. Moreover, this method delivered more accurate counts than the conventional visible colony counting methods. Due to these advantages, this imaging-based micro-colony enumeration technique provides a new platform for the quantification of viable microorganisms.


Lab on a Chip ◽  
2015 ◽  
Vol 15 (19) ◽  
pp. 3891-3896 ◽  
Author(s):  
Junqi Zhang ◽  
Rongxin Fu ◽  
Liping Xie ◽  
Qi Li ◽  
Wenhan Zhou ◽  
...  

A smart device for label-free and real-time detection of gene point mutation-related diseases was developed based on the high dark phase contrast of vapor condensation.


2021 ◽  
Vol 207 ◽  
pp. 108565
Author(s):  
Jinling Gao ◽  
Nesredin Kedir ◽  
Cody D. Kirk ◽  
Julio Hernandez ◽  
Junyu Wang ◽  
...  

2022 ◽  
Vol 17 (01) ◽  
pp. C01043
Author(s):  
L. Brombal ◽  
L. Rigon ◽  
F. Arfelli ◽  
R.H. Menk ◽  
F. Brun

Abstract The PEPI project is developing a new experimental facility integrating a chromatic photon-counting detector within an edge-illumination (EI) phase-contrast setup. In this context, a novel Geant4-based simulation tool has been introduced with the aim of defining the optimal design of the experimental setup. The code includes a custom X-ray refraction process and allows simulating the whole EI system, comprising a polychromatic and extended source, absorbing masks, substrates, their movement during acquisition, and X-ray detection. In this paper, a realistic spectral detector model is introduced and its energy response validated against experimental data acquired with synchrotron radiation at energies between 26 and 50 keV. Moreover, refraction and transmission images of a plastic phantom are reconstructed from simulation data and successfully compared with theoretical predictions. Finally, an optimization study aiming at finding the effect of the X-ray focal spot size (i.e. spatial coherence) on image quality is presented; the results suggest that, in the considered configuration, the system can tolerate source sizes up to 30 μm, while, for a fixed exposure time, the best signal-to-noise ratio in refraction images is found for source sizes in the order of 10 to 15 μm.


Sign in / Sign up

Export Citation Format

Share Document