scholarly journals Translational control plays an important role in the adaptive heat-shock response of Streptomyces coelicolor

2017 ◽  
Author(s):  
Giselda Bucca ◽  
Radhika Pothi ◽  
Andrew Hesketh ◽  
Carla Möller-Levet ◽  
David A. Hodgson ◽  
...  
Keyword(s):  
Gene Expression ◽  
Heat Stress ◽  
Heat Shock ◽  
Molecular Chaperones ◽  
Translational Control ◽  
Streptomyces Coelicolor ◽  
Cellular Damage ◽  
Transcriptional Level ◽  
Control Of Gene Expression ◽  
Genome Wide

AbstractStress-induced adaptations require multiple levels of regulation in all organisms to repair cellular damage. In the present study we evaluated the genome-wide transcriptional and translational changes following heat stress exposure in the soil-dwelling model actinomycete bacterium, Streptomyces coelicolor. The combined analysis revealed an unprecedented level of translational control of gene expression, deduced through polysome profiling, in addition to transcriptional changes. Our data show little correlation between the transcriptome and ‘translatome’; while an obvious downward trend in genome wide transcription was observed, polysome associated transcripts following heat-shock showed an opposite upward trend. A handful of key protein players, including the major molecular chaperones and proteases were highly induced at both the transcriptional and translational level following heat-shock, a phenomenon known as ‘potentiation’. Many other transcripts encoding cold-shock proteins, ABC-transporter systems, multiple transcription factors were more highly polysome-associated following heat stress; interestingly, these protein families were not induced at the transcriptional level and therefore were not previously identified as part of the stress response. Thus, stress coping mechanisms at the level of gene expression in this bacterium go well beyond the induction of a relatively small number of molecular chaperones and proteases in order to ensure cellular survival at non-physiological temperatures.

scholarly journals De Novo Transcriptome Analysis Reveals Potential Thermal Adaptation Mechanisms in the Cicada Hyalessa fuscata

Animals ◽  
2021 ◽  
Vol 11 (10) ◽  
pp. 2785
Author(s):  
Hoa Quynh Nguyen ◽  
Yuseob Kim ◽  
Yikweon Jang
Keyword(s):  
Gene Expression ◽  
Heat Stress ◽  
Heat Shock ◽  
Thermal Tolerance ◽  
De Novo ◽  
Expression Patterns ◽  
Thermal Adaptation ◽  
Urban Heat Islands ◽  
Cellular Damage ◽  
Acute Heat Stress

In metropolitan Seoul, populations of the cicada Hyalessa fuscata in hotter urban heat islands (“high UHIs”) exhibit higher thermal tolerance than those in cooler UHIs (“low UHIs”). We hypothesized that heat stress may activate the expression of genes that facilitate greater thermal tolerance in high-UHI cicadas than in those from cooler areas. Differences in the transcriptomes of adult female cicadas from high-UHI, low-UHI, and suburban areas were analyzed at the unheated level, after acute heat stress, and after heat torpor. No noticeable differences in unheated gene expression patterns were observed. After 10 min of acute heat stress, however, low-UHI and suburban cicadas expressed more heat shock protein genes than high-UHI counterparts. More specifically, remarkable changes in the gene expression of cicadas across areas were observed after heat torpor stimulus, as represented by a large number of up- and downregulated genes in the heat torpor groups compared with the 10 min acute heat stress and control groups. High-UHI cicadas expressed the most differentially expressed genes, followed by the low-UHI and suburban cicadas. There was a notable increase in the expression of heat shock, metabolism, and detoxification genes; meanwhile, immune-related, signal transduction, and protein turnover genes were downregulated in high-UHI cicadas versus the other cicada groups. These results suggested that under heat stress, cicadas inhabiting high-UHIs could rapidly express genes related to heat shock, energy metabolism, and detoxification to protect cells from stress-induced damage and to increase their thermal tolerance toward heat stress. The downregulation of apoptosis mechanisms in high-UHI cicadas suggested that there was less cellular damage, which likely contributed to their high tolerance of heat stress.

scholarly journals Computational design and experimental characterization of a photo-controlled mRNA-cap guanine-N7 methyltransferase

2021 ◽  
Author(s):  
Dennis Reichert ◽  
Helena Schepers ◽  
Julian Simke ◽  
Horst Lechner ◽  
Wolfgang Dörner ◽  
...  
Keyword(s):  
Gene Expression ◽  
Computational Design ◽  
Eukaryotic Cells ◽  
Transcriptional Level ◽  
Experimental Characterization ◽  
Temporal Control ◽  
Control Of Gene Expression ◽  
Multicellular Organisms

The spatial and temporal control of gene expression at the post-transcriptional level is essential in eukaryotic cells and developing multicellular organisms. In recent years optochemical and optogenetic tools have enabled...

The heat shock response: A case study of chromatin dynamics in gene regulation

2013 ◽  
Vol 91 (1) ◽  
pp. 42-48 ◽  
Author(s):  
Sheila S. Teves ◽  
Steven Henikoff
Keyword(s):  
Gene Expression ◽  
Gene Regulation ◽  
Heat Shock ◽  
Heat Shock Response ◽  
Control Of Gene Expression ◽  
Pol Ii ◽  
Chromatin Dynamics ◽  
Regulatory Processes ◽  
Shock Response ◽  
Rate Limiting

Recent studies in transcriptional regulation using the Drosophila heat shock response system have elucidated many of the dynamic regulatory processes that govern transcriptional activation and repression. The classic view that the control of gene expression occurs at the point of RNA polymerase II (Pol II) recruitment is now giving way to a more complex outlook of gene regulation. Promoter chromatin dynamics coordinate with transcription factor binding to maintain the promoters of active genes accessible. For a large number of genes, the rate-limiting step in Pol II progression occurs during its initial elongation, where Pol II transcribes 30–50 bp and pauses for further signals. These paused genes have unique genic chromatin architecture and dynamics compared with genes where Pol II recruitment is rate limiting for expression. Further elongation of Pol II along the gene causes nucleosome turnover, a continuous process of eviction and replacement, which suggests a potential mechanism for Pol II transit along a nucleosomal template. In this review, we highlight recent insights into transcription regulation of the heat shock response and discuss how the dynamic regulatory processes involved at each transcriptional stage help to generate faithful yet highly responsive gene expression.

scholarly journals Meal Feeding Alters Translational Control of Gene Expression in Rat Liver

2005 ◽  
Vol 135 (3) ◽  
pp. 367-375 ◽  
Author(s):  
Ali K. Reiter ◽  
Stephen J. Crozier ◽  
Scot R. Kimball ◽  
Leonard S. Jefferson
Keyword(s):  
Gene Expression ◽  
Rat Liver ◽  
Translational Control ◽  
Control Of Gene Expression ◽  
Meal Feeding

scholarly journals Epigenomics of Plant’s Responses to Environmental Stress

2017 ◽  
Author(s):  
Suresh Kumar
Keyword(s):  
Gene Expression ◽  
Nuclear Dna ◽  
Environmental Stresses ◽  
Transcriptional Level ◽  
Epigenetic Changes ◽  
Post Translational Modifications ◽  
Genome Wide ◽  
A Cell ◽  
Non Coding Rnas ◽  
Function Activity

Genome-wide epigenetic changes in plants are being reported during the development and environmental stresses, which are often correlated with gene expression at the transcriptional level. Sum total of the biochemical changes in nuclear DNA, post-translational modifications in histone proteins and variations in the biogenesis of non-coding RNAs in a cell is known as epigenome. These changes are often responsible for variation in expression of the gene without any change in the underlying nucleotide sequence. The changes might also cause variation in chromatin structure resulting into the changes in function/activity of the genome. The epigenomic changes are dynamic with respect to the endogenous and/or environmental stimuli which affect phenotypic plasticity of the organism. Both, the epigenetic changes and variation in gene expression might return to the pre-stress state soon after withdrawal of the stress. However, a part of the epigenetic changes may be retained which is reported to play role in acclimatization, adaptation as well as in the evolutionary processes. Understanding epigenome-engineering for improved stress tolerance in plants has become essential for better utilization of the genetic factors. This review delineates the importance of epigenomics towards possible improvement of plant’s responses to environmental stresses for climate resilient agriculture.

Translational control of gene expression in the human brain

1989 ◽  
Vol 13 (3-4) ◽  
pp. 469-479 ◽  
Author(s):  
Niklas Langstrom ◽  
Anders Eriksson ◽  
Bengt Winblad ◽  
William Wallace
Keyword(s):  
Gene Expression ◽  
Human Brain ◽  
Translational Control ◽  
Control Of Gene Expression

scholarly journals Ovarian Development and Vitellogenin Gene Expression under Heat Stress in Silkworm,Bombyx mori

2016 ◽  
Vol 2016 ◽  
pp. 1-8
Author(s):  
Satinath Paul ◽  
Bela Keshan
Keyword(s):  
Gene Expression ◽  
Heat Stress ◽  
Heat Shock ◽  
Reproductive Performance ◽  
Ovarian Development ◽  
Fat Body ◽  
Shock Treatment ◽  
Heat Shock Treatment ◽  
Vitellogenin Gene ◽  
Vitellogenin Mrna

The present study observed the effect of heat stress on ovarian development, fecundity, and vitellogenin gene expression in silkworm,Bombyx mori. The result showed that the heat shock treatment to spinning larvae and pupae at 39°C (1 h and 2 h) did not cause any adverse effect on the reproductive performance ofB. mori.However, the heat shock treatment at 42°C or above caused a decrease in the fecundity. The heat shock treatment to day 2 pupae for 2 h at 45°C caused a drastic effect on the development of ovary as measured by gonadosomatic index. The study thus showed that a brief exposure ofBombyxlarvae and pupae to a temperature of 42°C or higher, much prevalent in tropical countries like India, greatly affects the ovarian development and reproductive performance of this commercially important insect. The study further showed a developmental- and tissue-specific expression of vitellogenin mRNA in fat body and ovary upon heat shock. When heat shock treatment was done at 39°C and 42°C to spinning larvae, ovary showed an upregulation in the expression of vitellogenin mRNA, whereas fat body failed to do so. However, at 45°C, both fat body and ovary showed a downregulation. The heat shock treatment to day 2 pupae showed an upregulation in the vitellogenin mRNA expression in both fat body and ovary, even at 45°C. The upregulation in the expression of vitellogenin upon heat shock indicates its role in thermal protection ofBombyxlarvae and pupae.

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