scholarly journals A Single Gene Causes an Interspecific Difference in Pigmentation in Drosophila

2015 ◽  
Author(s):  
Yasir H. Ahmed-Braimah ◽  
Andrea L. Sweigart
Keyword(s):  
Morphological Evolution ◽  
Single Gene ◽  
Regulatory Region ◽  
Morphological Difference ◽  
Color Difference ◽  
Drosophila Virilis ◽  
Interspecific Difference ◽  
Discernible Effect ◽  
Virilis Group ◽  
The Difference

The genetic basis of species differences remains understudied. Studies in insects have contributed significantly to our understanding of morphological evolution. Pigmentation traits in particular have received a great deal of attention and several genes in the insect pigmentation pathway have been implicated in inter- and intraspecific differences. Nonetheless, much remains unknown about many of the genes in this pathway and their potential role in understudied taxa. Here we genetically analyze the puparium color difference between members of the Virilis group of Drosophila. The puparium of Drosophila virilis is black, while those of D. americana, D. novamexicana, and D. lummei are brown. We used a series of backcross hybrid populations between D. americana and D. virilis to map the genomic interval responsible for the difference between this species pair. First, we show that the pupal case color difference is caused by a single Mendelizing factor, which we ultimately map to an ~11kb region on chromosome 5. The mapped interval includes only the first exon and regulatory region(s) of the dopamine N-acetyltransferase gene (Dat). This gene encodes an enzyme that is known to play a part in the insect pigmentation pathway. Second, we show that this gene is highly expressed at the onset of pupation in light-brown taxa (D. americana and D. novamexicana) relative to D. virilis, but not in the dark-brown D. lummei. Finally, we examine the role of Dat in adult pigmentation between D. americana (heavily melanized) and D. novamexicana (lightly melanized) and find no discernible effect of this gene in adults. Our results demonstrate that a single gene is entirely or almost entirely responsible for a morphological difference between species.

Regulation of the yeast CYT1 gene encoding cytochrome c1 by HAP1 and HAP2/3/4

1991 ◽  
Vol 11 (10) ◽  
pp. 4934-4942
Author(s):  
J C Schneider ◽  
L Guarente
Keyword(s):  
Cytochrome C ◽  
Mitochondrial Biogenesis ◽  
Binding Sites ◽  
Single Gene ◽  
Regulatory Region ◽  
Gene Encoding ◽  
High Affinity ◽  
High Affinity Site ◽  
Cytochrome C1 ◽  
The Difference

Mitochondrial biogenesis requires the coordinate induction of hundreds of genes that reside in the nucleus. We describe here a study of the regulation of the nuclear-encoded cytochrome c1 of the b-c1 complex. Unlike cytochrome c, which is encoded by two genes, CYC1 and CYC7, c1 is encoded by a single gene, CYT1. The regulatory region of the CYT1 promoter contains binding sites for the HAP1 and HAP2/3/4 transactivators that regulate CYC1. The binding of HAP1 to the CYT1 element was studied in detail and found to differ in two important respects from binding to the CYC1 element. First, while CYC1 contains two sites that bind HAP1 cooperatively, CYT1 has a single high-affinity site. Second, while the CYT1 site and the stronger HAP1-binding site of CYC1 share a large block of homology, the HAP1 footprints at these sites are offset by several nucleotides. We discuss how these differences in HAP1 binding might relate to the difference in the biology of cytochrome c and cytochrome c1.

scholarly journals Regulation of the yeast CYT1 gene encoding cytochrome c1 by HAP1 and HAP2/3/4.

1991 ◽  
Vol 11 (10) ◽  
pp. 4934-4942 ◽  
Author(s):  
J C Schneider ◽  
L Guarente
Keyword(s):  
Cytochrome C ◽  
Mitochondrial Biogenesis ◽  
Binding Sites ◽  
Single Gene ◽  
Regulatory Region ◽  
Gene Encoding ◽  
High Affinity ◽  
High Affinity Site ◽  
Cytochrome C1 ◽  
The Difference

Mitochondrial biogenesis requires the coordinate induction of hundreds of genes that reside in the nucleus. We describe here a study of the regulation of the nuclear-encoded cytochrome c1 of the b-c1 complex. Unlike cytochrome c, which is encoded by two genes, CYC1 and CYC7, c1 is encoded by a single gene, CYT1. The regulatory region of the CYT1 promoter contains binding sites for the HAP1 and HAP2/3/4 transactivators that regulate CYC1. The binding of HAP1 to the CYT1 element was studied in detail and found to differ in two important respects from binding to the CYC1 element. First, while CYC1 contains two sites that bind HAP1 cooperatively, CYT1 has a single high-affinity site. Second, while the CYT1 site and the stronger HAP1-binding site of CYC1 share a large block of homology, the HAP1 footprints at these sites are offset by several nucleotides. We discuss how these differences in HAP1 binding might relate to the difference in the biology of cytochrome c and cytochrome c1.

scholarly journals Morphological consistency of bilateral hip joints in adults based on the X-ray and CT data

2021 ◽  
Author(s):  
Ran Zhao ◽  
Hong Cai ◽  
Hua Tian ◽  
Ke Zhang
Keyword(s):  
Hip Joint ◽  
Morphological Difference ◽  
Medullary Cavity ◽  
Size Difference ◽  
Single Plane ◽  
X Ray ◽  
Stem Size ◽  
The Difference ◽  
Ct Data ◽  
Anatomical Parameters

Abstract Purpose The application of the anatomical parameters of the contralateral hip joint to guide the preoperative template of the affected side relies on the bilateral hip symmetry. We investigated the bilateral hip symmetry and range of anatomical variations by measurement and comparison of bilateral hip anatomical parameters. Methods This study included 224 patients (448 hips) who were diagnosed with osteoarthritis (OA) and avascular necrosis (AVN) of the femur head, and underwent bilateral primary total hip arthroplasty (THA) in our hospital from January 2012 to August 2020. Imaging data included 224 patients X-ray and 30 CT data at the end of the cohort. Anatomical parameters, including the acetabular abduction angle and trochanteric height, were measured using the Noble method. Postoperative measurements included stem size, difference of leg length and offset. Results Except for the isthmus width, there were no significant differences in the anatomical morphology of the hip joint. Among the demographic factors, there was a correlation between body weight and NSA. Among various anatomical parameters, a correlation was present between medullary cavity widths of T + 20, T, and T − 20. The difference in the use of stem size is not due to the morphological difference of bilateral medullary cavity, but due to the different of 1- or 2-stage surgery. Conclusion Bilateral symmetry was present among the patients with normal morphology of the hip medullary cavity, theoretically confirming the feasibility of structural reconstruction of the hip joint using the hip joint on the uninjured side. Additionally, the difference in the morphology of the hip medullary cavity is not present in a single plane but is synergistically affected by multiple adjacent planes.

scholarly journals Enhancer of rudimentaryp1, e(r)p1, a highly conserved enhancer of the rudimentary gene.

Genetics ◽  
1994 ◽  
Vol 138 (4) ◽  
pp. 1163-1170 ◽  
Author(s):  
E Wojcik ◽  
A M Murphy ◽  
H Fares ◽  
K Dang-Vu ◽  
S I Tsubota
Keyword(s):  
Amino Acid Sequences ◽  
Drosophila Virilis ◽  
P Element ◽  
R Gene ◽  
Adult Males ◽  
Males And Females ◽  
Polyadenylation Sites ◽  
The Difference ◽  
Polyadenylation Signals ◽  
Untranslated Leader Region

Abstract A hybrid dysgenesis-induced mutation, enhancer of rudimentaryp1 (e(r)p1), is a recessive enhancer of a weak rudimentary mutant phenotype in Drosophila melanogaster. The e(r) gene was cloned using P element tagging and localized to region 8B on the X chromosome. It encodes a 1.0-kb and a 1.2-kb transcript. The 1.0-kb transcript is present in both adult males and females, while the 1.2-kb transcript is predominantly found in females. The difference in the lengths of the two e(r) transcripts is caused by two different polyadenylation sites spaced 228 bp apart. The amounts of both of these transcripts are drastically reduced in the e(r)p1 mutant. The P element in e(r)p1 is inserted in the 5'-untranslated leader region near the start of transcription. It may be producing its effect by suppressing transcription and/or by providing transcription termination and polyadenylation signals. The putative e(r) protein is 104 amino acids in length and bears no striking resemblance to protein sequences in GenBank or PIR. While its biochemical function is unknown at this time, sequence analysis indicates that the e(r) protein is highly conserved and, presumably, functionally very important. The amino acid sequences of the D. melanogaster and the Drosophila virilis proteins are 95% identical.

scholarly journals A new approach for the removal of unfixed dyes from reactive dyed cotton by Fenton oxidation

2019 ◽  
Vol 9 (2) ◽  
pp. 133-141
Author(s):  
Sana Islam ◽  
Irfan Ahmed Shaikh ◽  
Nabeela Firdous ◽  
Azhar Ali ◽  
Yumna Sadef
Keyword(s):  
Treatment Time ◽  
Color Difference ◽  
Quality Parameters ◽  
Water Levels ◽  
Fenton Oxidation ◽  
Color Strength ◽  
New Approach ◽  
Reactive Dyeing ◽  
The Difference ◽  
Day By Day

Abstract The use of fresh water in the textile wash-off process is becoming more expensive day by day due to declining water levels in the region. In this study, the potential of using Fenton oxidation in wash-off cotton reactive dyeing was investigated. The spent wash-off wastewater from one dyeing was first treated with Fenton oxidation, and then reused in several washing-offs employing widely used reactive dyes, C.I. Reactive Yellow 145, C.I. Reactive Blue 21, and C.I. Reactive Red 195. Experimental results showed that at acidic pH (3) using optimized quantities of FeSO4 and H2O2, Fenton process yielded a significant reduction (90–95%) of color in 30 minutes of treatment time. New washing-offs were then carried out in Fenton decolorized wash-off wastewater, and dyed cotton fabric samples were subjected to quality evaluations in terms of color difference properties (ΔL*, Δc*,Δb*, Δa*, ΔE*cmc) and wash fastness properties. This study concluded that after Fenton oxidation, treated liquor can be effectively reused subsequent washing-offs without compromising fabric quality parameters as ΔE*cmc was less than 1, and washing and crocking was also in the range of 4.5–5 which is commercially acceptable. Moreover, the difference in color strength in terms of k/s was also negligible.

scholarly journals Comparison between Mobile Camera and DSLR Camera Photography for the Evaluation of Shade of Anterior Teeth - A Cross-Sectional Study

2019 ◽  
Vol 9 (2) ◽  
pp. 111-119
Author(s):  
Prabhat Shrestha ◽  
Sabina Poudel
Keyword(s):  
Mobile Phone ◽  
Color Difference ◽  
Cross Sectional Study ◽  
Cross Sectional ◽  
Mean Values ◽  
Anterior Teeth ◽  
Mobile Cameras ◽  
Kappa Value ◽  
Acceptable Method ◽  
The Difference

 Background: Color accuracy plays a major role in creating an esthetic prosthesis. Photos taken with DSLR cameras have been the most frequent means of recording and transferring the color of teeth. Mobile phone cameras are emerging as a popular alternative to DSLR cameras due to its convenience. Our aim was to compare the color difference (ΔE) between the pictures taken with DSLR cameras and mobile cameras with and with­out using flash. Methods: Photos of right maxillary central incisors of patients (n=60) were taken with DSLR camera and mobile camera with and without using flash. The pictures were standardized with gray card and processed in Adobe Photoshop Lightroom CC software and the L*a*b* values of the pictures were compared to find the difference in color. Results: The percentage of agreement (ΔE≤2.7) for the difference of color between DSLR camera and mobile phone cameras without using flash (ΔE1) was 3.3% and with using flash (ΔE2) was 1.7%. The coefficient of agreement (using Kappa coefficient) between (ΔE1) and (ΔE2) showed total disagreement (kappa value =-.02). The mean values of ΔE1 was (8.3±3.3) and ΔE2 was (7.23±2.4). Conclusions: It was concluded that the color of mobile camera with or without using flash could not be considered as an acceptable method of recording color of teeth.

scholarly journals Molecular Genetic Analysis of Nucleotide Polymorphisms Associated with Ethambutol Resistance in Human Isolates ofMycobacterium tuberculosis

2000 ◽  
Vol 44 (2) ◽  
pp. 326-336 ◽  
Author(s):  
Srinivas V. Ramaswamy ◽  
Amol G. Amin ◽  
Servet Göksel ◽  
Charles E. Stager ◽  
Shu-Jun Dou ◽  
...  
Keyword(s):  
Amino Acid ◽  
Single Gene ◽  
Molecular Genetic ◽  
Regulatory Region ◽  
Amino Acid Replacement ◽  
Molecular Genetic Analysis ◽  
Central Component ◽  
Nucleotide Polymorphisms ◽  
Molecular Change

ABSTRACT Ethambutol (EMB) is a central component of drug regimens used worldwide for the treatment of tuberculosis. To gain insight into the molecular genetic basis of EMB resistance, approximately 2 Mb of five chromosomal regions with 12 genes in 75 epidemiologically unassociated EMB-resistant and 33 EMB-susceptible Mycobacterium tuberculosis strains isolated from human patients were sequenced. Seventy-six percent of EMB-resistant organisms had an amino acid replacement or other molecular change not found in EMB-susceptible strains. Thirty-eight (51%) EMB-resistant isolates had a resistance-associated mutation in only 1 of the 12 genes sequenced. Nineteen EMB-resistant isolates had resistance-associated nucleotide changes that conferred amino acid replacements or upstream potential regulatory region mutations in two or more genes. Most isolates (68%) with resistance-associated mutations in a single gene had nucleotide changes in embB, a gene encoding an arabinosyltransferase involved in cell wall biosynthesis. The majority of these mutations resulted in amino acid replacements at position 306 or 406 of EmbB. Resistance-associated mutations were also identified in several genes recently shown to be upregulated in response to exposure of M. tuberculosis to EMB in vitro, including genes in theiniA operon. Approximately one-fourth of the organisms studied lacked mutations inferred to participate in EMB resistance, a result indicating that one or more genes that mediate resistance to this drug remain to be discovered. Taken together, the results indicate that there are multiple molecular pathways to the EMB resistance phenotype.

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