scholarly journals Genetic approach towards the identification of auxin–cytokinin crosstalk components involved in root development

2012 ◽  
Vol 367 (1595) ◽  
pp. 1469-1478 ◽  
Author(s):  
Agnieszka Bielach ◽  
Jérôme Duclercq ◽  
Peter Marhavý ◽  
Eva Benková
Keyword(s):  
Plant Growth ◽  
Root Development ◽  
Lateral Root ◽  
Root Architecture ◽  
Molecular Mechanisms ◽  
Special Focus ◽  
Physiological Processes ◽  
Root Organogenesis ◽  
Division Cell ◽  
Molecular Components

Phytohormones are important plant growth regulators that control many developmental processes, such as cell division, cell differentiation, organogenesis and morphogenesis. They regulate a multitude of apparently unrelated physiological processes, often with overlapping roles, and they mutually modulate their effects. These features imply important synergistic and antagonistic interactions between the various plant hormones. Auxin and cytokinin are central hormones involved in the regulation of plant growth and development, including processes determining root architecture, such as root pole establishment during early embryogenesis, root meristem maintenance and lateral root organogenesis. Thus, to control root development both pathways put special demands on the mechanisms that balance their activities and mediate their interactions. Here, we summarize recent knowledge on the role of auxin and cytokinin in the regulation of root architecture with special focus on lateral root organogenesis, discuss the latest findings on the molecular mechanisms of their interactions, and present forward genetic screen as a tool to identify novel molecular components of the auxin and cytokinin crosstalk.

Lateral root formation and nutrients: nitrogen in the spotlight

2021 ◽  
Author(s):  
Pierre-Mathieu Pélissier ◽  
Hans Motte ◽  
Tom Beeckman
Keyword(s):  
Signaling Pathways ◽  
Root System ◽  
Root Development ◽  
Lateral Root ◽  
Molecular Mechanisms ◽  
Root Formation ◽  
Lateral Roots ◽  
Nutrient Use Efficiency ◽  
Lateral Root Formation ◽  
Lateral Root Development

Abstract Lateral roots are important to forage for nutrients due to their ability to increase the uptake area of a root system. Hence, it comes as no surprise that lateral root formation is affected by nutrients or nutrient starvation, and as such contributes to the root system plasticity. Understanding the molecular mechanisms regulating root adaptation dynamics towards nutrient availability is useful to optimize plant nutrient use efficiency. There is at present a profound, though still evolving, knowledge on lateral root pathways. Here, we aimed to review the intersection with nutrient signaling pathways to give an update on the regulation of lateral root development by nutrients, with a particular focus on nitrogen. Remarkably, it is for most nutrients not clear how lateral root formation is controlled. Only for nitrogen, one of the most dominant nutrients in the control of lateral root formation, the crosstalk with multiple key signals determining lateral root development is clearly shown. In this update, we first present a general overview of the current knowledge of how nutrients affect lateral root formation, followed by a deeper discussion on how nitrogen signaling pathways act on different lateral root-mediating mechanisms for which multiple recent studies yield insights.

scholarly journals CLE-CLAVATA1 Signaling Pathway Modulates Lateral Root Development under Sulfur Deficiency

Plants ◽  
2019 ◽  
Vol 8 (4) ◽  
pp. 103 ◽  
Author(s):  
Wei Dong ◽  
Yinghua Wang ◽  
Hideki Takahashi
Keyword(s):  
Root Development ◽  
Lateral Root ◽  
Molecular Mechanisms ◽  
Plant Root ◽  
Root System Architecture ◽  
Wild Type ◽  
Lateral Root Development ◽  
S Deficiency ◽  
Cle Peptide ◽  
Plant Root System

Plant root system architecture changes drastically in response to availability of macronutrients in the soil environment. Despite the importance of root sulfur (S) uptake in plant growth and reproduction, molecular mechanisms underlying root development in response to S availability have not been fully characterized. We report here on the signaling module composed of the CLAVATA3 (CLV3)/EMBRYO SURROUNDING REGION (CLE) peptide and CLAVATA1 (CLV1) leucine-rich repeat receptor kinase, which regulate lateral root (LR) development in Arabidopsis thaliana upon changes in S availability. The wild-type seedlings exposed to prolonged S deficiency showed a phenotype with low LR density, which was restored upon sulfate supply. In contrast, the clv1 mutant showed a higher daily increase rate of LR density relative to the wild-type under prolonged S deficiency, which was diminished to the wild-type level upon sulfate supply, suggesting that CLV1 directs a signal to inhibit LR development under S-deficient conditions. CLE2 and CLE3 transcript levels decreased under S deficiency and through CLV1-mediated feedback regulations, suggesting the levels of CLE peptide signals are adjusted during the course of LR development. This study demonstrates a fine-tuned mechanism for LR development coordinately regulated by CLE-CLV1 signaling and in response to changes in S availability.

scholarly journals Development of Root Architecture in Thirty-seven Tree Species of Field Grown Nursery Stock1

2020 ◽  
Vol 38 (4) ◽  
pp. 143-148
Author(s):  
G. W. Watson ◽  
A.M. Hewitt
Keyword(s):  
Root System ◽  
Root Development ◽  
Lateral Root ◽  
Root Architecture ◽  
Lateral Roots ◽  
Acer Rubrum ◽  
Acer Pseudoplatanus ◽  
Lateral Root Development ◽  
Nursery Production ◽  
One Year

Abstract The number and size of lateral roots of a tree seedling can be evaluated visually, and could potentially be used to select plants with better root systems early in nursery production. To evaluate how root architecture develops in young trees, root architecture of 37 species of trees was compared at two stages of development: as harvested seedlings, and then one year after replanting. The total number of lateral roots and the number of roots >2mm (0.08 in) diameter that were present on the portion of the taproot remaining on seedlings after standard root pruning were recorded. Neither could consistently predict the number of lateral roots on the root system one year after replanting. Development of roots (sum of diameters) regenerated from the cut end of the seedling taproot was equal or greater than lateral root development in 84 percent of evaluated species. Even when regenerated root development was significantly less than lateral root development, the regenerated roots still comprised up to 44 percent of the root system. Regenerated roots from the cut end of the taproot can become a major component of the architecture of the structural root system in nursery stock. Index words: structural roots, nursery production, root regeneration. Species used in this study: European black alder (Alnus glutinosa Gaertn.), green ash (Fraxinus pennsylvanica Marshall), quaking aspen (Populus tremuloides Michx.), European white birch. (Betula pendula Roth), river birch (Betula nigra L.), black locust (Robinia pseudoacacia L.), northern catalpa (Catalpa speciosa (Warder) Warder ex Engelm.), Mazzard cherry [Prunus avium [L.) L.], chokecherry (Prunus virginiana L.), American elm (Ulmus americana L.), Siberian elm (Ulmus pumilia L.), goldenchain tree (Laburnum anagyroides Medik.), northern hackberry (Celtis occidentalis L.), Cockspur hawthorn (Crateagus crus-galli L.), single seed hawthorn (Crateagus monogyna Jacq.), honeylocust (Gleditsia tricanthos L.), Japanese pagodatree [Sophora japonica (L.) Schott], Katsura tree (Cercidiphyllum japonicum Siebold & Zucc.), Kentucky coffee tree [Gymnocladus dioicus (L.) K. Koch], littleleaf linden (Tilia cordata Mill.), boxelder (Acer negundo L.), hedge maple (Acer campestre L.), Norway maple (Acer platanoides L.), red maple (Acer rubrum L.), silver maple (Acer saccharinum L.), sugar maple (Acer saccharum Marshall), sycamore maple (Acer pseudoplatanus L.), English Oak (Quercus robur L.), northern red oak (Quercus rubra L.), Siberian peashrub (Caragana arborescens Lam.), American plum (Prunus Americana Marshall ), Myrobalan plum (Prunus cerasifera Ehrh.), redbud (Cercis Canadensis L.), Russian olive (Elaeagnus angustifoliaI L.), tuliptree (Liriodendron tulipifera L.), black walnut (Juglans nigra L.), Japanese zelkova (Zelkova serrata (Thunb.) Makino).

scholarly journals Oak Taproot Growth Disruption Differentially Impacts Root Architecture during Nursery Production

Forests ◽  
2020 ◽  
Vol 11 (8) ◽  
pp. 798
Author(s):  
Shanon Hankin ◽  
Gary Watson
Keyword(s):  
Root Development ◽  
Lateral Root ◽  
Root Architecture ◽  
Lateral Roots ◽  
Production Methods ◽  
Lateral Root Development ◽  
Root Regeneration ◽  
Nursery Production ◽  
Growth Disruption ◽  
Taproot Pruning

For urban trees with strong taproots, a shift in root growth towards increased lateral root development could improve tree performance in compacted, poorly drained urban soils. In effort to achieve this desired shift, various propagation and production practices exist within the nursery industry. However, the effectiveness of practices used to disrupt taproot development, as well as their impact on root architecture, has been largely undocumented. To determine how seedling root systems respond to taproot growth disruption, we pruned oak seedling taproots either mechanically at 5 and/or 15 cm, or via air pruning at 15 cm. Taproot regeneration and lateral root development were evaluated after two years. Taproot pruning resulted in multiple regenerated taproots. The location and number of times the taproot(s) was pruned did not appear to alter the ultimate number. Mechanical taproot pruning did not affect lateral root development above the first pruning cut location at 5 or 15 cm, but generally increased the density of lateral roots below the pruning cut, likely due to the multiple taproots present. Most lateral roots were fine roots less than 1 mm in diameter (fine roots), being unlikely to become long-lived components of the root system architecture. The average number of lateral roots on air pruned (AP) seedlings was generally greater than on the same taproot segment of control (C) seedlings. To determine how these seedling changes impact the root regeneration of liner stock, we planted both taproot pruned and taproot air pruned seedlings in in-ground fabric bags filled with field soil (B) or directly into the field without bags (F). Root regeneration potential (RRP) at the bottom and lateral surfaces of the root ball were evaluated. There was less RRP on the lateral surface of the root ball in taproot air pruned, container-grown (CG) compared to taproot pruned, bare root (BR) bur oak liners, and there was no difference in red oak liners. The multiple taproots of mechanically pruned BR seedlings did not result in excessive taproot development as liners. In contrast, CG seedling taproots restricted by air pruning produced more regenerated taproots after transplanting. While seedling taproot growth disruption does disrupt the growth of a dominant single taproot and alters the architecture toward increasing the number of lateral roots, these practices do not result in laterally dominated root architecture at the liner stage of nursery production. Future research should determine how these production methods effect lateral root growth after a tree is established in the landscape and determine appropriate combinations of production methods for different species.

scholarly journals A Linear Model to Describe Branching and Allometry in Root Architecture

Plants ◽  
2019 ◽  
Vol 8 (7) ◽  
pp. 218
Author(s):  
Joel Colchado-López ◽  
R. Cristian Cervantes ◽  
Ulises Rosas
Keyword(s):  
Root Development ◽  
Lateral Root ◽  
Root Architecture ◽  
Complex Structure ◽  
Primary Root ◽  
Allometric Model ◽  
Multiple Traits ◽  
Three Stages ◽  
Natural Variations ◽  
New Feature

Root architecture is a complex structure that comprises multiple traits of the root phenotype. Novel platforms and models have been developed to better understand root architecture. In this methods paper, we introduce a novel allometric model, named rhizochron index (m), which describes lateral root (LR) branching and elongation patterns across the primary root (PR). To test our model, we obtained data from 16 natural accessions of Arabidopsis thaliana at three stages of early root development to measure conventional traits of root architecture (e.g., PR and LR length), and extracted the rhizochron index (m). In addition, we tested previously published datasets to assess the utility of the rhizochron index (m) to distinguish mutants and environmental effects on root architecture. Our results indicate that rhizochron index (m) is useful to distinguish the natural variations of root architecture between A. thaliana accessions, but not across early stages of root development. Correlation analyses in these accessions showed that m is a novel trait that partially captures information from other root architecture traits such as total lateral root length, and the ratio between lateral root and primary root lengths. Moreover, we found that the rhizochron index was useful to distinguish ABA effect on root architecture, as well as the mutant pho1 phenotype. We propose the rhizochron index (m) as a new feature of the root architectural system to be considered, in addition to conventional traits in future investigations.

Non-coding RNAs and exercise: pathophysiological role and clinical application in the cardiovascular system

2018 ◽  
Vol 132 (9) ◽  
pp. 925-942 ◽  
Author(s):  
Clarissa P.C. Gomes ◽  
David de Gonzalo-Calvo ◽  
Rocio Toro ◽  
Tiago Fernandes ◽  
Daniel Theisen ◽  
...  
Keyword(s):  
Cardiovascular System ◽  
Molecular Mechanisms ◽  
Physiological Processes ◽  
Overwhelming Evidence ◽  
Pathophysiological Role ◽  
Non Coding Rnas ◽  
Exercise Induced ◽  
New Biomarkers ◽  
Molecular Components ◽  
Response To Exercise

There is overwhelming evidence that regular exercise training is protective against cardiovascular disease (CVD), the main cause of death worldwide. Despite the benefits of exercise, the intricacies of their underlying molecular mechanisms remain largely unknown. Non-coding RNAs (ncRNAs) have been recognized as a major regulatory network governing gene expression in several physiological processes and appeared as pivotal modulators in a myriad of cardiovascular processes under physiological and pathological conditions. However, little is known about ncRNA expression and role in response to exercise. Revealing the molecular components and mechanisms of the link between exercise and health outcomes will catalyse discoveries of new biomarkers and therapeutic targets. Here we review the current understanding of the ncRNA role in exercise-induced adaptations focused on the cardiovascular system and address their potential role in clinical applications for CVD. Finally, considerations and perspectives for future studies will be proposed.

scholarly journals The Ca2+ sensor protein CMI1 fine tunes root development, auxin distribution and responses

2018 ◽  
Author(s):  
Ora Hazak ◽  
Elad Mamon ◽  
Meirav Lavy ◽  
Hasana Sternberg ◽  
Smrutisanjita Behera ◽  
...  
Keyword(s):  
Root Growth ◽  
Root Development ◽  
Lateral Root ◽  
Developmental Plasticity ◽  
Molecular Mechanisms ◽  
Ectopic Expression ◽  
Growth Arrest ◽  
Root Hairs ◽  
Root Tip ◽  
Auxin Distribution

Signaling cross-talks between auxin, a regulator of plant development and Ca2+, a universal second messenger have been proposed to modulate developmental plasticity in plants. However, the underlying molecular mechanisms are largely unknown. Here we report that in Arabidopsis roots, auxin elicits specific Ca2+ signaling pattern that spatially coincide with the expression pattern of auxin-regulated genes. We identified the EF-hand protein CMI1 (Ca2+ sensor Modulator of ICR1) as an interactor of the ROP effector ICR1 (Interactor of Constitutively active ROP). CMI1 is monomeric in solution, changes its secondary structure at Ca2+ concentrations ranging from 10-9 to 10-8 M and its interaction with ICR1 is Ca2+ dependent, involving a conserved hydrophobic pocket. cmi1 mutants display an increased auxin response including shorter primary roots, longer root hairs, longer hypocotyls and altered lateral root formation while ectopic expression of CMI1 induces root growth arrest and reduced auxin responses at the root tip. When expressed alone, CMI1 is localized at the plasma membrane, the cytoplasm and in nuclei. Interaction of CMI1 and ICR1 results in exclusion of CMI1 from nuclei and suppression of the root growth arrest. CMI1 expression is directly upregulated by auxin while expression of auxin induced genes is enhanced in cmi1 concomitantly with repression of auxin induced Ca2+ increases in the lateral root cap and vasculature, indicating that CMI1 represses early auxin responses. Collectively, our findings identify a crucial function of Ca2+ signaling and CMI1 in root growth and suggest an auxin-Ca2+ regulatory feedback loop that fine tunes root development.

scholarly journals Host auxin machinery is important in mediating root architecture changes induced by Pseudomonas fluorescens GM30 and Serendipita indica

2020 ◽  
Author(s):  
Anna Matthiadis ◽  
Poornima Sukumar ◽  
Alyssa DeLeon ◽  
Dale Pelletier ◽  
Jessy L. Labbé ◽  
...  
Keyword(s):  
Plant Growth ◽  
Lateral Root ◽  
Root Architecture ◽  
Fungal Species ◽  
Root Production ◽  
Auxin Signaling ◽  
Beneficial Microbes ◽  
Plant Growth Promoting ◽  
Growth Promoting

AbstractAuxin is a key phytohormone that is integral to plant developmental processes including those underlying root initiation, elongation, and branching. Beneficial microbes have been shown to have an impact on root development, potentially mediated through auxin. In this study, we explore the role of host auxin signaling and transport components in mediating the root growth promoting effects of beneficial microbes. Towards this end, we undertook co-culture studies of Arabidopsis thaliana plants with microbes previously reported to promote lateral root proliferation and produce auxin. Two types of beneficial microbes were included in the present study; a plant growth promoting bacterial species of interest, Pseudomonas fluorescens GM30, and a well-studied plant growth promoting fungal species, Serendipita indica (Piriformospora indica). Following co-culture, lateral root production was found restored in auxin transport inhibitor-treated plants, suggesting involvement of microbe and/or microbially-produced auxin in altering plant auxin levels. In order to clarify the role of host auxin signaling and transport pathways in mediating interactions with bacterial and fungal species, we employed a suite of auxin genetic mutants as hosts in co-culture screens. Our result show that the transport proteins PIN2, PIN3, and PIN7 and the signaling protein ARF19, are required for mediating root architecture effects by the bacterial and/or fungal species. Mutants corresponding to these proteins did not significantly respond to co-culture treatment and did not show increases in lateral root production and lateral root density. These results implicate the importance of host auxin signaling in both bacterial and fungal induced changes in root architecture and serve as a driver for future research on understanding the role of auxin-dependent and auxin-independent pathways in mediating plant-microbe interactions in economically important crop species.

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