scholarly journals Site-selective and hydrolytic two-strand scission of double-stranded DNA using Ce(IV)/EDTA and pseudo-complementary PNA

2004 ◽  
Vol 32 (19) ◽  
pp. e153-e153 ◽  
Author(s):  
Y. Yamamoto
Keyword(s):  
Strand Scission ◽  
Double Stranded Dna ◽  
Site Selective

Activation of Double-stranded DNA by One pcPNA Strand for Its Site-selective Scission with CeIV/EDTA

2007 ◽  
Vol 36 (6) ◽  
pp. 780-781 ◽  
Author(s):  
Yuichiro Aiba ◽  
Yoji Yamamoto ◽  
Makoto Komiyama
Keyword(s):  
Double Stranded Dna ◽  
Site Selective

Artificial restriction DNA cutter for site-selective scission of double-stranded DNA with tunable scission site and specificity

2008 ◽  
Vol 3 (4) ◽  
pp. 655-662 ◽  
Author(s):  
Makoto Komiyama ◽  
Yuichiro Aiba ◽  
Yoji Yamamoto ◽  
Jun Sumaoka
Keyword(s):  
Double Stranded Dna ◽  
Artificial Restriction ◽  
Site Selective

scholarly journals Rapid site-selective hydrolysis of double-stranded DNA by use of Ce(IV)/EDTA and PNA bearing phosphate group

2005 ◽  
Vol 49 (1) ◽  
pp. 277-278 ◽  
Author(s):  
Yuichiro Aiba ◽  
Masao Mori ◽  
Yoji Yamamoto ◽  
Makoto Komiyama
Keyword(s):  
Phosphate Group ◽  
Selective Hydrolysis ◽  
Double Stranded Dna ◽  
Site Selective ◽  
Hydrolysis Of

scholarly journals PNA–NLS conjugates as single-molecular activators of target sites in double-stranded DNA for site-selective scission

2013 ◽  
Vol 11 (32) ◽  
pp. 5233 ◽  
Author(s):  
Yuichiro Aiba ◽  
Yuya Hamano ◽  
Wataru Kameshima ◽  
Yasuyuki Araki ◽  
Takehiko Wada ◽  
...  
Keyword(s):  
Double Stranded Dna ◽  
Target Sites ◽  
Site Selective

Site-Selective Binding of Nanoparticles to Double-Stranded DNA via Peptide Nucleic Acid “Invasion”

ACS Nano ◽  
2011 ◽  
Vol 5 (4) ◽  
pp. 2467-2474 ◽  
Author(s):  
Andrea L. Stadler ◽  
Dazhi Sun ◽  
Mathew M. Maye ◽  
Daniel van der Lelie ◽  
Oleg Gang
Keyword(s):  
Nucleic Acid ◽  
Peptide Nucleic Acid ◽  
Selective Binding ◽  
Double Stranded Dna ◽  
Site Selective

Site-selective Scission of Double-stranded DNA by Combining a Triplex-forming bis-PNA and Ce(IV)/EDTA

2013 ◽  
Vol 42 (10) ◽  
pp. 1300-1302 ◽  
Author(s):  
Yuichiro Aiba ◽  
Kohei Yasuda ◽  
Makoto Komiyama
Keyword(s):  
Double Stranded Dna ◽  
Site Selective

Recognition and Strand Scission at Junctions between Single- and Double-Stranded DNA by a Trinuclear Copper Complex

2001 ◽  
Vol 123 (23) ◽  
pp. 5588-5589 ◽  
Author(s):  
Kristi J. Humphreys ◽  
Kenneth D. Karlin ◽  
Steven E. Rokita
Keyword(s):  
Copper Complex ◽  
Strand Scission ◽  
Double Stranded Dna

Discrimination of monomer from multimer DNA disk-shaped toruses by freezeetch TEM

1984 ◽  
Vol 42 ◽  
pp. 210-211
Author(s):  
George C. Ruben ◽  
Kenneth A. Marx
Keyword(s):  
Biochemical Data ◽  
Dna Structures ◽  
Ice Surface ◽  
Double Stranded Dna ◽  
Data Support ◽  
Dna Organization ◽  
Trivalent Cations

In vitro collapse of DNA by trivalent cations like spermidine produces torus (donut) shaped DNA structures thought to have a DNA organization similar to certain double stranded DNA bacteriophage and viruses. This has prompted our studies of these structures using freeze-etch low Pt-C metal (9Å) replica TEM. With a variety of DNAs the TEM and biochemical data support a circumferential DNA winding model for hydrated DNA torus organization. Since toruses are almost invariably oriented nearly horizontal to the ice surface one of the most accessible parameters of a torus population is annulus (ring) thickness. We have tabulated this parameter for populations of both nicked, circular (Fig. 1: n=63) and linear (n=40: data not shown) ϕX-174 DNA toruses. In both cases, as can be noted in Fig. 1, there appears to be a compact grouping of toruses possessing smaller dimensions separated from a dispersed population possessing considerably larger dimensions.

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