scholarly journals RSAT 2015: Regulatory Sequence Analysis Tools

2015 ◽  
Vol 43 (W1) ◽  
pp. W50-W56 ◽  
Author(s):  
Alejandra Medina-Rivera ◽  
Matthieu Defrance ◽  
Olivier Sand ◽  
Carl Herrmann ◽  
Jaime A. Castro-Mondragon ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Regulatory Sequence ◽  
Analysis Tools

scholarly journals RSAT 2011: regulatory sequence analysis tools

2011 ◽  
Vol 39 (suppl) ◽  
pp. W86-W91 ◽  
Author(s):  
M. Thomas-Chollier ◽  
M. Defrance ◽  
A. Medina-Rivera ◽  
O. Sand ◽  
C. Herrmann ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Regulatory Sequence ◽  
Analysis Tools

scholarly journals Regulatory Sequence Analysis Tools

2003 ◽  
Vol 31 (13) ◽  
pp. 3593-3596 ◽  
Author(s):  
J. van Helden
Keyword(s):  
Sequence Analysis ◽  
Regulatory Sequence ◽  
Analysis Tools

scholarly journals RSAT 2018: regulatory sequence analysis tools 20th anniversary

2018 ◽  
Vol 46 (W1) ◽  
pp. W209-W214 ◽  
Author(s):  
Nga Thi Thuy Nguyen ◽  
Bruno Contreras-Moreira ◽  
Jaime A Castro-Mondragon ◽  
Walter Santana-Garcia ◽  
Raul Ossio ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Regulatory Sequence ◽  
Analysis Tools ◽  
20Th Anniversary

scholarly journals RSAT: regulatory sequence analysis tools

2008 ◽  
Vol 36 (Web Server) ◽  
pp. W119-W127 ◽  
Author(s):  
M. Thomas-Chollier ◽  
O. Sand ◽  
J.-V. Turatsinze ◽  
R. Janky ◽  
M. Defrance ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Regulatory Sequence ◽  
Analysis Tools

scholarly journals Regulatory sequence analysis of semaphorin 4D 5' non-coding region

2019 ◽  
Vol 10 (4) ◽  
pp. 903-910
Author(s):  
Lijuan Qiu ◽  
Hongchao Jiang ◽  
Jia Luo ◽  
Juemin Xi ◽  
Xiaodan Wang ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Regulatory Sequence ◽  
Coding Region ◽  
Semaphorin 4D

scholarly journals BLAST: at the core of a powerful and diverse set of sequence analysis tools

2004 ◽  
Vol 32 (Web Server) ◽  
pp. W20-W25 ◽  
Author(s):  
S. McGinnis ◽  
T. L. Madden
Keyword(s):  
Sequence Analysis ◽  
The Core ◽  
Analysis Tools

scholarly journals SADI: Sequence Analysis Tools for Stata

2017 ◽  
Vol 17 (3) ◽  
pp. 546-572 ◽  
Author(s):  
Brendan Halpin
Keyword(s):  
Time Series ◽  
Sequence Analysis ◽  
Life Course ◽  
Sequence Data ◽  
R Package ◽  
Optimal Matching ◽  
Matching Algorithm ◽  
Analysis Tools ◽  
Categorical Time Series ◽  
Main Components

The SADI package provides tools for sequence analysis, which focuses on the similarity and dissimilarity between categorical time series such as life-course trajectories. SADI‘s main components are tools to calculate intersequence distances using several different algorithms, including the optimal matching algorithm, but it also includes utilities to graph, summarize, and manage sequence data. It provides similar functionality to the R package TraMineR and the Stata package SQ but is substantially faster than the latter.

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