scholarly journals Mechanistic insight into ligand binding to G-quadruplex DNA

2014 ◽  
Vol 42 (9) ◽  
pp. 5447-5455 ◽  
Author(s):  
Francesco Saverio Di Leva ◽  
Ettore Novellino ◽  
Andrea Cavalli ◽  
Michele Parrinello ◽  
Vittorio Limongelli
2020 ◽  
Vol 56 (38) ◽  
pp. 5186-5189 ◽  
Author(s):  
Michael P. O’Hagan ◽  
Javier Ramos-Soriano ◽  
Susanta Haldar ◽  
Sadiyah Sheikh ◽  
Juan C. Morales ◽  
...  

A pyridinium-decorated photoresponsive dithienylethene selectively targets G-quadruplex DNA, allowing binding mode and toxicity to be controlled exclusively with visible light.


2016 ◽  
Vol 2016 ◽  
pp. 1-7 ◽  
Author(s):  
Yi-ning Zhong ◽  
Yan Zhang ◽  
Yun-qiong Gu ◽  
Shi-yun Wu ◽  
Wen-ying Shen ◽  
...  

Tryptanthrin is one of the most important members of indoloquinoline alkaloids. We obtained this alkaloid fromIsatis. Two novelFeIIandCoIIcomplexes of tryptanthrin were first synthesized. Single-crystal X-ray diffraction analyses show that these complexes display distorted four-coordinated tetrahedron geometry via two heterocyclic nitrogen and oxygen atoms from tryptanthrin ligand. Binding with G-quadruplex DNA properties revealed that both complexes were found to exhibit significant interaction with G-quadruplex DNA. This study may potentially serve as the basis of future rational design of metal-based drugs from natural products that target the G-quadruplex DNA.


2019 ◽  
Vol 55 (98) ◽  
pp. 14717-14720
Author(s):  
Robert K. Leśniak ◽  
Anna M. Rydzik ◽  
Jos J. A. G. Kamps ◽  
Amjad Kahn ◽  
Timothy D. W. Claridge ◽  
...  

19F and 1H NMR studies on fluorine labelled γ-butyrobetaine hydroxylase provide mechanistic insight into substrate and ligand binding, suggesting cooperativity between two monomers.


2021 ◽  
Vol 22 (12) ◽  
pp. 6476
Author(s):  
Sabrina Dallavalle ◽  
Luce M. Mattio ◽  
Roberto Artali ◽  
Loana Musso ◽  
Anna Aviñó ◽  
...  

Curaxins and especially the second-generation derivative curaxin CBL0137 have important antitumor activities in multiple cancers such as glioblastoma, melanoma and others. Although most of the authors suggest that their mechanism of action comes from the activation of p53 and inactivation of NF-kB by targeting FACT, there is evidence supporting the involvement of DNA binding in their antitumor activity. In this work, the DNA binding properties of curaxin CBL0137 with model quadruplex DNA oligomers were studied by 1H NMR, CD, fluorescence and molecular modeling. We provided molecular details of the interaction of curaxin with two G-quadruplex structures, the single repeat of human telomere d(TTAGGGT)4 and the c-myc promoter Pu22 sequence. We also performed 1H and 31P NMR experiments were also performed in order to investigate the interaction with duplex DNA models. Our data support the hypothesis that the interaction of curaxin with G-quadruplex may provide a novel insight into the DNA-binding properties of CBL0137, and it will be helpful for the design of novel selective DNA-targeting curaxin analogues.


2020 ◽  
Vol 22 (20) ◽  
pp. 11583-11592
Author(s):  
L. Comez ◽  
F. Bianchi ◽  
V. Libera ◽  
M. Longo ◽  
C. Petrillo ◽  
...  

A multi-technique biophysical method is used to study the ligand binding to G-quadruplex DNA.


ChemBioChem ◽  
2021 ◽  
Author(s):  
Victoria Birkedal ◽  
Mikayel Aznauryan ◽  
Sofie Louise Noer ◽  
Camilla W. Pedersen ◽  
Jean-Louis Mergny ◽  
...  

2017 ◽  
Vol 13 (8) ◽  
pp. 1458-1468 ◽  
Author(s):  
S. Harikrishna ◽  
Saikiran Kotaru ◽  
P. I. Pradeepkumar

Ligand binding toc-MYCG-quadruplex DNA induces conformational changes in the loops of the quadruplex.c-MYCquadruplex-specific small molecules can be designed by targeting these loop conformers.


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