scholarly journals A Mutational Analysis of Leaf Morphogenesis in Arabidopsis thaliana

Genetics ◽  
1999 ◽  
Vol 152 (2) ◽  
pp. 729-742 ◽  
Author(s):  
Genoveva Berná ◽  
Pedro Robles ◽  
José Luis Micol
Keyword(s):  
Arabidopsis Thaliana ◽  
Large Scale ◽  
Mutational Analysis ◽  
Leaf Ontogeny ◽  
Leaf Morphogenesis ◽  
Complete Penetrance ◽  
Complementation Groups ◽  
Mutant Phenotypes ◽  
Leaf Mutants ◽  
Large Scale Screening

Abstract As a contribution to a better understanding of the developmental processes that are specific to plants, we have begun a genetic analysis of leaf ontogeny in the model system Arabidopsis thaliana by performing a large-scale screening for mutants with abnormal leaves. After screening 46,159 M2 individuals, arising from 5770 M1 parental seeds exposed to EMS, we isolated 1926 M2 putative leaf mutants, 853 of which yielded viable M3 inbred progeny. Mutant phenotypes were transmitted with complete penetrance and small variations in expressivity in 255 lines. Most of them were inherited as recessive monogenic traits, belonging to 94 complementation groups, which suggests that we did not reach saturation of the genome. We discuss the nature of the processes presumably perturbed in the phenotypic classes defined among our mutants.

scholarly journals Genetic Analysis of Salt-Tolerant Mutants in Arabidopsis thaliana

Genetics ◽  
2000 ◽  
Vol 154 (1) ◽  
pp. 421-436 ◽  
Author(s):  
Víctor Quesada ◽  
María Rosa Ponce ◽  
José Luis Micol
Keyword(s):  
Arabidopsis Thaliana ◽  
Large Scale ◽  
Crop Productivity ◽  
Protein Product ◽  
Incomplete Penetrance ◽  
Complementation Groups ◽  
Mutant Lines ◽  
Agricultural Areas ◽  
Ionic Effects ◽  
Large Scale Screening

Abstract Stress caused by the increased salinity of irrigated fields impairs plant growth and is one of the major constraints that limits crop productivity in many important agricultural areas. As a contribution to solving such agronomic problems, we have carried out a large-scale screening for Arabidopsis thaliana mutants induced on different genetic backgrounds by EMS treatment, fast neutron bombardment, or T-DNA insertions. From the 675,500 seeds we screened, 17 mutant lines were isolated, all but one of which yielded 25–70% germination levels on 250 mm NaCl medium, a condition in which their ancestor ecotypes are unable to germinate. Monogenic recessive inheritance of NaCl-tolerant germination was displayed with incomplete penetrance by all the selected mutants, which fell into five complementation groups. These were named SALOBREÑO (SAÑ) and mapped relative to polymorphic microsatellites, the map positions of three of them suggesting that they are novel genes. Strains carrying mutations in the SAÑ1-SAÑ4 genes display similar responses to both ionic effects and osmotic pressure, their germination being NaCl and mannitol tolerant but KCl and Na2SO4 sensitive. In addition, NaCl-, KCl-, and mannitol-tolerant as well as abscisic-acid-insensitive germination was displayed by sañ5, whose genetic and molecular characterization indicates that it carries an extremely hypomorphic or null allele of the ABI4 gene, its deduced protein product lacking the APETALA2 DNA binding domain.

Summary of complementation groups of UV-sensitive CHO cell mutants isolated by large-scale screening

Mutagenesis ◽  
1989 ◽  
Vol 4 (5) ◽  
pp. 349-354 ◽  
Author(s):  
David Busch ◽  
Carol Greiner ◽  
Kathy Lewis ◽  
Ruth Ford ◽  
Gerald Adair ◽  
...  
Keyword(s):  
Large Scale ◽  
Cho Cell ◽  
Complementation Groups ◽  
Large Scale Screening

Mutational Analysis of Root Gravitropism and Phototropism of Arabidopsis thaliana Seedlings

1992 ◽  
Vol 19 (4) ◽  
pp. 439 ◽  
Author(s):  
K Okada ◽  
Y Shimura
Keyword(s):  
Arabidopsis Thaliana ◽  
Mutational Analysis ◽  
Agar Medium ◽  
Simple Procedure ◽  
Genetic Regulation ◽  
Response Type ◽  
Phototropic Response ◽  
Light Stimuli ◽  
Root Gravitropism ◽  
Complementation Groups

Root gravitropism and phototropism were analysed in young seedlings of Arabidopsis thaliana by a simple procedure using agar plates, by changing the position of plates or by covering the plates with black opaque sheet. Roots of A. thaliana seedlings growing on the surface of agar medium showed clear responses to gravity and light stimuli. A set of mutants with abnormal gravitropism or phototropism was isolated. Gravitropic mutants were separated into two types, reduced-response type and non-response type. The mutants were genetically divided into two complementation groups, aux1 and agr1. In both groups the reduced-response type mutants carried weaker genetic lesions, whereas the non-response type mutants carried heavier genetic lesions. Mutants with no phototropic response were classified into two complementation groups, rpt1 and rpt2. The root tropism mutants showed normal tropic responses in shoots, indicating that genetic regulation pathways are different in roots and shoots.

scholarly journals Genetic analysis of ethylene signal transduction in Arabidopsis thaliana: five novel mutant loci integrated into a stress response pathway.

Genetics ◽  
1995 ◽  
Vol 139 (3) ◽  
pp. 1393-1409 ◽  
Author(s):  
G Roman ◽  
B Lubarsky ◽  
J J Kieber ◽  
M Rothenberg ◽  
J R Ecker
Keyword(s):  
Signal Transduction ◽  
Arabidopsis Thaliana ◽  
Complementation Group ◽  
Ethylene Response ◽  
Etiolated Seedlings ◽  
Complementation Groups ◽  
Ethylene Signal Transduction ◽  
Exogenous Ethylene ◽  
Mutant Phenotypes ◽  
Ethylene Signal

Abstract The response of Arabidopsis thaliana etiolated seedlings to the plant hormone ethylene is a conspicuous phenotype known as the triple response. We have identified genes that are required for ethylene perception and responses by isolating mutants that fail to display a triple response in the presence of exogenous ethylene. Five new complementation groups have been identified. Four of these loci, designated ein4, ein5, ein6 and ein7, are insensitive to ethylene. The fifth complementation group, eir1, is defined by a novel class of mutants that have agravitropic and ethylene-insensitive roots. Double-mutant phenotypes have allowed the positioning of these loci in a genetic pathway for ethylene signal transduction. The ethylene-response pathway is defined by the following loci: ETR1, EIN4, CTR1, EIN2, EIN3, EIN5, EIN6, EIN7, EIR1, AUX1 and HLS1. ctr1-1 is epistatic to etr1-3 and ein4, indicating that CTR1 acts after both ETR1 and EIN4 in the ethylene-response pathway. Mutations at the EIN2, EIN3, EIN5, EIN6 and EIN7 loci are all epistatic to the ctr1 seedling phenotype. The EIR1 and AUX1 loci define a root-specific ethylene response that does not require EIN3 or EIN5 gene activity. HLS1 appears to be required for differential cell growth in the apical hook. The EIR1, AUX1 and HLS1 genes may function in the interactions between ethylene and other plant hormones that occur late in the signaling pathway of this simple gas.

scholarly journals Characterization of X-linked recessive lethal mutations affecting embryonic morphogenesis in Drosophila melanogaster.

Genetics ◽  
1988 ◽  
Vol 118 (1) ◽  
pp. 109-120
Author(s):  
D F Eberl ◽  
A J Hilliker
Keyword(s):  
Drosophila Melanogaster ◽  
X Chromosome ◽  
Large Scale ◽  
Lethal Mutations ◽  
Internal Structures ◽  
Complementation Groups ◽  
Embryonic Morphogenesis ◽  
Mutant Phenotypes ◽  
Cuticular Structures

Abstract This study attempted to assay the zygotic contribution of X chromosome genes to the genetic control of embryonic morphogenesis in Drosophila melanogaster. A systematic screen for X-linked genes which affect the morphology of the embryo was undertaken, employing the phenotype of whole mount embryos as the major screening criterion. Of 800 EMS-induced lethal mutations analyzed, only 14% were embryonic lethal, and of these only a minority affected embryonic morphogenesis. By recombination and complementation analyses, the mutations that affected embryonic morphogenesis were sequestered into 26 complementation groups. Fourteen of the loci correspond to genes previously identified in a large-scale screen in which fixed cuticles were examined, and 12 new loci have been identified. Most of the mutations which disrupt embryonic morphology had specific and uniform mutant phenotypes. Mutations were recovered which disrupt major morphogenetic events such as gastrulation, germ band retraction and head involution. No mutations were found which arrest the embryos prior to blastoderm formation. However, a novel class was found, one comprised of mutations which interfere with the development of internal structures but not cuticular structures. Nevertheless, saturation of the X chromosome for genes important for embryonic morphogenesis is probably incomplete.

Training Aides to Screen Children for Speech and Language Problems

1976 ◽  
Vol 7 (4) ◽  
pp. 236-241 ◽  
Author(s):  
Marisue Pickering ◽  
William R. Dopheide
Keyword(s):  
Rural Areas ◽  
Large Scale ◽  
School Personnel ◽  
School Age Children ◽  
Speech And Language ◽  
Elementary School Age ◽  
Evaluation Procedures ◽  
Language Problems ◽  
Competency Based ◽  
Large Scale Screening

This report deals with an effort to begin the process of effectively identifying children in rural areas with speech and language problems using existing school personnel. A two-day competency-based workshop for the purpose of training aides to conduct a large-scale screening of speech and language problems in elementary-school-age children is described. Training strategies, implementation, and evaluation procedures are discussed.

Recent Progress in Machine Learning-based Prediction of Peptide Activity for Drug Discovery

2019 ◽  
Vol 19 (1) ◽  
pp. 4-16 ◽  
Author(s):  
Qihui Wu ◽  
Hanzhong Ke ◽  
Dongli Li ◽  
Qi Wang ◽  
Jiansong Fang ◽  
...  
Keyword(s):  
Machine Learning ◽  
Drug Discovery ◽  
Large Scale ◽  
Recent Progress ◽  
High Specificity ◽  
Learning Approaches ◽  
Anticancer Peptides ◽  
The Past ◽  
Traditional Approaches ◽  
Large Scale Screening

Over the past decades, peptide as a therapeutic candidate has received increasing attention in drug discovery, especially for antimicrobial peptides (AMPs), anticancer peptides (ACPs) and antiinflammatory peptides (AIPs). It is considered that the peptides can regulate various complex diseases which are previously untouchable. In recent years, the critical problem of antimicrobial resistance drives the pharmaceutical industry to look for new therapeutic agents. Compared to organic small drugs, peptide- based therapy exhibits high specificity and minimal toxicity. Thus, peptides are widely recruited in the design and discovery of new potent drugs. Currently, large-scale screening of peptide activity with traditional approaches is costly, time-consuming and labor-intensive. Hence, in silico methods, mainly machine learning approaches, for their accuracy and effectiveness, have been introduced to predict the peptide activity. In this review, we document the recent progress in machine learning-based prediction of peptides which will be of great benefit to the discovery of potential active AMPs, ACPs and AIPs.

scholarly journals Analytical Validation and Clinical Application of Rapid Serological Tests for SARS-CoV-2 Suitable for Large-Scale Screening

Diagnostics ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 869
Author(s):  
Amedeo De Nicolò ◽  
Valeria Avataneo ◽  
Jessica Cusato ◽  
Alice Palermiti ◽  
Jacopo Mula ◽  
...  
Keyword(s):  
Early Diagnosis ◽  
Real Time Pcr ◽  
Large Scale ◽  
High Sensitivity ◽  
Analytical Validation ◽  
Pcr Assay ◽  
Serological Tests ◽  
Flow Test ◽  
Lateral Flow Test ◽  
Large Scale Screening

Recently, large-scale screening for COVID-19 has presented a major challenge, limiting timely countermeasures. Therefore, the application of suitable rapid serological tests could provide useful information, however, little evidence regarding their robustness is currently available. In this work, we evaluated and compared the analytical performance of a rapid lateral-flow test (LFA) and a fast semiquantitative fluorescent immunoassay (FIA) for anti-nucleocapsid (anti-NC) antibodies, with the reverse transcriptase real-time PCR assay as the reference. In 222 patients, LFA showed poor sensitivity (55.9%) within two weeks from PCR, while later testing was more reliable (sensitivity of 85.7% and specificity of 93.1%). Moreover, in a subset of 100 patients, FIA showed high sensitivity (89.1%) and specificity (94.1%) after two weeks from PCR. The coupled application for the screening of 183 patients showed satisfactory concordance (K = 0.858). In conclusion, rapid serological tests were largely not useful for early diagnosis, but they showed good performance in later stages of infection. These could be useful for back-tracing and/or to identify potentially immune subjects.

scholarly journals MUTATIONAL ANALYSIS OF THE REGION SURROUNDING THE 93D HEAT SHOCK LOCUS OF DROSOPHILA MELANOGASTER

Genetics ◽  
1984 ◽  
Vol 106 (2) ◽  
pp. 249-265
Author(s):  
Jym Mohler ◽  
Mary Lou Pardue
Keyword(s):  
Drosophila Melanogaster ◽  
Heat Shock ◽  
Mutational Analysis ◽  
Point Mutations ◽  
Γ Irradiation ◽  
Lethal Mutations ◽  
Complementation Groups ◽  
In Trans ◽  
Shock Locus ◽  
Shock Proteins

ABSTRACT The region containing subdivisions 93C, 93D and 93E on chromosome 3 of Drosophila melanogaster has been screened for visible and lethal mutations. Treatment with three mutagens, γ irradiation, ethyl methanesulfonate and diepoxybutane, has produced mutations that fall into 20 complementation groups, including the previously identified ebony locus. No point mutations affecting the heat shock locus in 93D were detected; however, a pair of deficiencies that overlap in the region of this locus was isolated. Flies heterozygous in trans for this pair of deficiencies are capable of producing all of the major heat shock puffs (except 93D) and the major heat shock proteins. In addition, these flies show recovery of normal protein synthesis following a heat shock.

scholarly journals Genetic and Molecular Analysis of Region 88E9;88F2 in Drosophila melanogaster, Including the ear Gene Related to Human Factors Involved in Lineage-Specific Leukemias

Genetics ◽  
2002 ◽  
Vol 160 (3) ◽  
pp. 1051-1065
Author(s):  
Claudia B Zraly ◽  
Yun Feng ◽  
Andrew K Dingwall
Keyword(s):  
Large Scale ◽  
Drosophila Genome ◽  
Embryonic Cells ◽  
Ems Mutagenesis ◽  
Recessive Lethal ◽  
Protein Levels ◽  
Late Embryogenesis ◽  
Complementation Groups ◽  
Mammalian Genes ◽  
Map Location

Abstract We identified and characterized the Drosophila gene ear (ENL/AF9-related), which is closely related to mammalian genes that have been implicated in the onset of acute lymphoblastic and myelogenous leukemias when their products are fused as chimeras with those of human HRX, a homolog of Drosophila trithorax. The ear gene product is present in all early embryonic cells, but becomes restricted to specific tissues in late embryogenesis. We mapped the ear gene to cytological region 88E11-13, near easter, and showed that it is deleted by Df(3R)ea5022rx1, a small, cytologically invisible deletion. Annotation of the completed Drosophila genome sequence suggests that this region might contain as many as 26 genes, most of which, including ear, are not represented by mutant alleles. We carried out a large-scale noncom-plementation screen using Df(3R)ea5022rx1 and chemical (EMS) mutagenesis from which we identified sevenc novel multi-allele recessive lethal complementation groups in this region. An overlapping deficiency, Df(3R)Po4, allowed us to map several of these groups to either the proximal or the distal regions of Df(3R)ea5022rx1. One of these complementation groups likely corresponds to the ear gene as judged by map location, terminal phenotype, and reduction of EAR protein levels.

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