Sequence Diversity of Pan troglodytes Subspecies and the Impact of WFDC6 Selective Constraints in Reproductive Immunity

Behavioural diversity may serve as a positive indicator of animal welfare that can be applied in long-term monitoring schemes in managed settings (eg zoos, laboratories, farms). Behavioural diversity is often higher when animals live in stimulating environments and experience positive events. Unfortunately, welfare researchers have not adopted consistent, standardised approaches to measuring behavioural diversity. The goal of this exploratory study was to utilise data from 41 adult chimpanzees (Pan troglodytes) housed across 16 zoological institutions to examine various models of Shannon's Diversity Index. Specifically, we investigated the impact of: combining versus splitting behaviours, including only positive behaviours, including human interaction, and considering recipient behaviours. We evaluate how the inclusion or exclusion of different behaviours impacts the relationship of behavioural diversity with: (i) concentrations of faecal glucocorticoid metabolites (GCM), a common indicator of adrenal activity; (ii) concentrations of immunoglobulin-A (IgA), an indicator of immune function and potential indicator of positive welfare; and (iii) stereotypic behaviour, a validated indicator of poor welfare. Most indices had significant negative relationships with faecal GCM. Animals that express a variety of behaviours from their species-typical repertoire have lower average faecal GCM concentrations and are likely experiencing better welfare. We did not find significant relationships between the behavioural diversity indices and IgA concentrations. Two indices were inversely associated with stereotypic behaviour. Our findings provide additional support for using Shannon's Diversity Index to calculate behavioural diversity as a robust, valid measure of positive welfare. However, future publications must justify the process for including or excluding behaviours from calculations.

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Chimpanzees and bonobos distinguish between risk and ambiguity

Biology Letters ◽

10.1098/rsbl.2010.0927 ◽

2010 ◽

Vol 7 (1) ◽

pp. 15-18 ◽

Cited By ~ 25

Author(s):

Alexandra G. Rosati ◽

Brian Hare

Keyword(s):

Decision Making ◽

Pan Troglodytes ◽

Ambiguity Aversion ◽

Pan Paniscus ◽

Decision Makers ◽

Food Type ◽

Decision Making Under Risk ◽

Choice Behaviour ◽

The Impact ◽

Risky Option

Although recent research has investigated animal decision-making under risk, little is known about how animals choose under conditions of ambiguity when they lack information about the available alternatives. Many models of choice behaviour assume that ambiguity does not impact decision-makers, but studies of humans suggest that people tend to be more averse to choosing ambiguous options than risky options with known probabilities. To illuminate the evolutionary roots of human economic behaviour, we examined whether our closest living relatives, chimpanzees ( Pan troglodytes ) and bonobos ( Pan paniscus ), share this bias against ambiguity. Apes chose between a certain option that reliably provided an intermediately preferred food type, and a variable option that could vary in the probability that it provided a highly preferred food type. To examine the impact of ambiguity on ape decision-making, we interspersed trials in which chimpanzees and bonobos had no knowledge about the probabilities. Both species avoided the ambiguous option compared with their choices for a risky option, indicating that ambiguity aversion is shared by humans, bonobos and chimpanzees.

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An Investigation into the Influence of Different Types of Nesting Materials upon the Welfare of Captive Chimpanzees (Pan troglodytes)

Animals ◽

10.3390/ani11061835 ◽

2021 ◽

Vol 11 (6) ◽

pp. 1835

Author(s):

Naomi Anderson ◽

Bala Amarasekaran ◽

David Riba

Keyword(s):

Sierra Leone ◽

Pan Troglodytes ◽

Relative Frequency ◽

Environmental Enrichment ◽

Positive Impact ◽

Older Individuals ◽

Wild Populations ◽

Treatment Conditions ◽

Different Types ◽

The Impact

Ensuring the welfare of captive chimpanzees (Pan troglodytes) is crucial, in part because they can act as a conservation resource in the case of wild populations becoming extinct. One strategy often adopted to ensure animal welfare is environmental enrichment. In this study, we investigated the impact of different nesting materials (leaves and branches, long grass, cotton sheets, and shredded newspaper) upon the welfare of chimpanzees housed at Tacugama Chimpanzee Sanctuary (Sierra Leone). Data was collected on 20 subjects (aged 4 to 15 years) between November 2019 and March 2020. Welfare was based on individuals’ relative frequency of affiliative, abnormal and agonistic behaviours, as well as their social and behavioural competence. We found that individuals’ welfare was higher when presented with nesting materials (compared to the control and post-treatment conditions), particularly when given shredded newspaper, regardless of whether the material was presented separately or in conjunction with another. In addition, welfare was highest: during the morning (vs evening); in groups of older individuals (vs younger); with females engaging in less agonistic behaviours compared to males; and males displaying relatively higher behavioural competence. Our results support previous research that captive chimpanzees be supplied with destructible nesting materials, and demonstrate that synthetic enrichments can indeed have a more positive impact upon welfare than their natural alternatives.

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The Impacts of Low Diversity Sequence Data on Phylodynamic Inference during an Emerging Epidemic

Viruses ◽

10.3390/v13010079 ◽

2021 ◽

Vol 13 (1) ◽

pp. 79

Author(s):

Anthony Lam ◽

Sebastian Duchene

Keyword(s):

Evolutionary Rate ◽

Sequence Data ◽

Exponential Model ◽

Sequence Diversity ◽

Low Diversity ◽

Outbreak Investigations ◽

The Impact ◽

Sampling Times ◽

Viral Outbreak ◽

Birth Death

Phylodynamic inference is a pivotal tool in understanding transmission dynamics of viral outbreaks. These analyses are strongly guided by the input of an epidemiological model as well as sequence data that must contain sufficient intersequence variability in order to be informative. These criteria, however, may not be met during the early stages of an outbreak. Here we investigate the impact of low diversity sequence data on phylodynamic inference using the birth–death and coalescent exponential models. Through our simulation study, estimating the molecular evolutionary rate required enough sequence diversity and is an essential first step for any phylodynamic inference. Following this, the birth–death model outperforms the coalescent exponential model in estimating epidemiological parameters, when faced with low diversity sequence data due to explicitly exploiting the sampling times. In contrast, the coalescent model requires additional samples and therefore variability in sequence data before accurate estimates can be obtained. These findings were also supported through our empirical data analyses of an Australian and a New Zealand cluster outbreaks of SARS-CoV-2. Overall, the birth–death model is more robust when applied to datasets with low sequence diversity given sampling is specified and this should be considered for future viral outbreak investigations.

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Chimpanzees in Laboratories: Distribution and Types of Research

Alternatives to Laboratory Animals ◽

10.1177/026119299502300506 ◽

1995 ◽

Vol 23 (5) ◽

pp. 579-583

Author(s):

Martin L. Stephens

Keyword(s):

Experimental Research ◽

Pan Troglodytes ◽

Available Information ◽

The Impact

This review presents the results of an informal 1993 survey of the distribution of chimpanzees (Pan troglodytes) in the world's laboratories, and the types of research conducted on them. Based on the available information, there are over 2200 chimpanzees in. laboratories, most of which are located in several US facilities. Europe apparently has less than 200 chimpanzees housed in two facilities. Worldwide, an estimated 80% of the chimpanzees in laboratories are used in studies on AIDS and hepatitis. It is concluded that, if Europe terminated its use of chimpanzees in research, for either financial, moral or political reasons, the impact on experimental research would be relatively minor.

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Formation of Lunar Craters and Bright Rays as a Result of Meteorite Impacts

Symposium - International Astronomical Union ◽

10.1017/s0074180900178404 ◽

1962 ◽

Vol 14 ◽

pp. 415-418

Author(s):

K. P. Stanyukovich ◽

V. A. Bronshten

Keyword(s):

Explosive Charge ◽

The Moon ◽

Meteorite Impacts ◽

The Earth ◽

Lunar Craters ◽

The Impact

The phenomena accompanying the impact of large meteorites on the surface of the Moon or of the Earth can be examined on the basis of the theory of explosive phenomena if we assume that, instead of an exploding meteorite moving inside the rock, we have an explosive charge (equivalent in energy), situated at a certain distance under the surface.

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The Geosciences Applied to Lunar Exploration

Symposium - International Astronomical Union ◽

10.1017/s0074180900178222 ◽

1962 ◽

Vol 14 ◽

pp. 169-257 ◽

Cited By ~ 9

Author(s):

J. Green

Keyword(s):

Lunar Surface ◽

Probable Mechanism ◽

Point Of View ◽

Lunar Exploration ◽

Geological Model ◽

Apply Geophysics ◽

Surface Features ◽

The Impact

The term geo-sciences has been used here to include the disciplines geology, geophysics and geochemistry. However, in order to apply geophysics and geochemistry effectively one must begin with a geological model. Therefore, the science of geology should be used as the basis for lunar exploration. From an astronomical point of view, a lunar terrain heavily impacted with meteors appears the more reasonable; although from a geological standpoint, volcanism seems the more probable mechanism. A surface liberally marked with volcanic features has been advocated by such geologists as Bülow, Dana, Suess, von Wolff, Shaler, Spurr, and Kuno. In this paper, both the impact and volcanic hypotheses are considered in the application of the geo-sciences to manned lunar exploration. However, more emphasis is placed on the volcanic, or more correctly the defluidization, hypothesis to account for lunar surface features.

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Asteroid and Comet Impact Speeds upon Mars: Significance for Panspermia and the Supply of Organics

International Astronomical Union Colloquium ◽

10.1017/s0252921100014718 ◽

1997 ◽

Vol 161 ◽

pp. 197-201 ◽

Cited By ~ 1

Author(s):

Duncan Steel

Keyword(s):

Probability Distributions ◽

Regions Of Interest ◽

Significant Fraction ◽

Organic Chemicals ◽

Impact Speed ◽

The Mean ◽

The Impact

AbstractWhilst lithopanspermia depends upon massive impacts occurring at a speed above some limit, the intact delivery of organic chemicals or other volatiles to a planet requires the impact speed to be below some other limit such that a significant fraction of that material escapes destruction. Thus the two opposite ends of the impact speed distributions are the regions of interest in the bioastronomical context, whereas much modelling work on impacts delivers, or makes use of, only the mean speed. Here the probability distributions of impact speeds upon Mars are calculated for (i) the orbital distribution of known asteroids; and (ii) the expected distribution of near-parabolic cometary orbits. It is found that cometary impacts are far more likely to eject rocks from Mars (over 99 percent of the cometary impacts are at speeds above 20 km/sec, but at most 5 percent of the asteroidal impacts); paradoxically, the objects impacting at speeds low enough to make organic/volatile survival possible (the asteroids) are those which are depleted in such species.

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