scholarly journals The prediction of protein subcellular localization from sequence: a shortcut to functional genome annotation

2008 ◽  
Vol 7 (1) ◽  
pp. 63-73 ◽  
Author(s):  
R. Casadio ◽  
P. L. Martelli ◽  
A. Pierleoni
Keyword(s):  
Subcellular Localization ◽  
Genome Annotation ◽  
Protein Subcellular Localization ◽  
Functional Genome Annotation ◽  
Functional Genome

scholarly journals Genomic Resources for Gene Discovery, Functional Genome Annotation, and Evolutionary Studies of Maize and Its Close Relatives

Genetics ◽  
2013 ◽  
Vol 195 (3) ◽  
pp. 723-737 ◽  
Author(s):  
Chao Wang ◽  
Xue Shi ◽  
Lin Liu ◽  
Haiyan Li ◽  
Jetty S.S. Ammiraju ◽  
...  
Keyword(s):  
Genome Annotation ◽  
Gene Discovery ◽  
Genomic Resources ◽  
Evolutionary Studies ◽  
Close Relatives ◽  
Functional Genome Annotation ◽  
Functional Genome

Functional genome annotation depicts probiotic properties of Bacillus velezensis FTC01

Gene ◽  
2019 ◽  
Vol 713 ◽  
pp. 143971 ◽  
Author(s):  
Jamile Queiroz Pereira ◽  
Ana Carolina Ritter ◽  
Samuel Cibulski ◽  
Adriano Brandelli
Keyword(s):  
Genome Annotation ◽  
Probiotic Properties ◽  
Bacillus Velezensis ◽  
Functional Genome Annotation ◽  
Functional Genome

Functional genome annotation through phylogenomic mapping

2005 ◽  
Vol 23 (6) ◽  
pp. 691-698 ◽  
Author(s):  
Balaji S Srinivasan ◽  
Nora B Caberoy ◽  
Garret Suen ◽  
Rion G Taylor ◽  
Radhika Shah ◽  
...  
Keyword(s):  
Genome Annotation ◽  
Functional Genome Annotation ◽  
Functional Genome

scholarly journals SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles

2017 ◽  
Vol 34 (8) ◽  
pp. 1401-1403 ◽  
Author(s):  
Jasper J Koehorst ◽  
Jesse C J van Dam ◽  
Edoardo Saccenti ◽  
Vitor A P Martins dos Santos ◽  
Maria Suarez-Diez ◽  
...  
Keyword(s):  
Genome Annotation ◽  
Semantic Framework ◽  
Fair Principles ◽  
Functional Genome Annotation ◽  
Functional Genome

An efficient transient assays system using Agrobacterium-mediated transformation of onion (Allium cepa) epidermal cells

2020 ◽  
Vol 80 (03) ◽  
Author(s):  
Yu-Miao Zhang ◽  
Jun Wang ◽  
Tao Wu
Keyword(s):  
Subcellular Localization ◽  
Protein Interaction ◽  
Protein Interactions ◽  
Epidermal Cells ◽  
Cyclin Dependent Kinase ◽  
Protein Subcellular Localization ◽  
Protein Protein Interactions ◽  
Efficient System ◽  
Protein Protein Interaction ◽  
Onion Epidermal Cells

In this study, the Agrobacterium infection medium, infection duration, detergent, and cell density were optimized. The sorghum-based infection medium (SbIM), 10-20 min infection time, addition of 0.01% Silwet L-77, and Agrobacterium optical density at 600 nm (OD600), improved the competence of onion epidermal cells to support Agrobacterium infection at >90% efficiency. Cyclin-dependent kinase D-2 (CDKD-2) and cytochrome c-type biogenesis protein (CYCH), protein-protein interactions were localized. The optimized procedure is a quick and efficient system for examining protein subcellular localization and protein-protein interaction.

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