Complete Genome Sequences and Phylogenetic Analysis of Two West Nile Virus Strains Isolated from Equines in Argentina in 2006 Could Indicate an Early Introduction of the Virus in the Southern Cone

2014 ◽  
Vol 14 (11) ◽  
pp. 794-800 ◽  
Author(s):  
Cintia M. Fabbri ◽  
Jorge B. García ◽  
María Alejandra Morales ◽  
Delia A. Enría ◽  
Silvana Levis ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
West Nile Virus ◽  
Complete Genome ◽  
Southern Cone ◽  
Genome Sequences ◽  
West Nile ◽  
Early Introduction ◽  
Virus Strains

scholarly journals Complete Genome Sequences and Phylogenetic Analysis of West Nile Virus Strains Isolated from the United States, Europe, and the Middle East

Virology ◽  
2002 ◽  
Vol 298 (1) ◽  
pp. 96-105 ◽  
Author(s):  
Robert S. Lanciotti ◽  
Gregory D. Ebel ◽  
Vincent Deubel ◽  
Amy J. Kerst ◽  
Severine Murri ◽  
...  
Keyword(s):  
United States ◽  
Phylogenetic Analysis ◽  
West Nile Virus ◽  
Middle East ◽  
Complete Genome ◽  
The United States ◽  
Genome Sequences ◽  
West Nile ◽  
Virus Strains

scholarly journals Complete Genome Sequence of West Nile Virus (WNV) from the First Human Case of Neuroinvasive WNV Infection in Cyprus

2017 ◽  
Vol 5 (43) ◽  
Author(s):  
Jan Richter ◽  
Christina Tryfonos ◽  
Aristomenis Tourvas ◽  
Dora Floridou ◽  
Niki I. Paphitou ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
West Nile Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Human Case ◽  
Genetic Lineage ◽  
West Nile ◽  
Cluster 2

ABSTRACT We report here the complete genome sequence of a West Nile virus (WNV) strain from the first laboratory-confirmed human case of neuroinvasive WNV infection in Cyprus. Phylogenetic analysis showed that this WNV strain grouped clearly into genetic lineage 1, clade 1a, cluster 2.

The complete genome sequence analysis of West Nile virus strains isolated in Slovakia (central Europe)

2018 ◽  
Vol 164 (1) ◽  
pp. 273-277
Author(s):  
Petra Drzewnioková ◽  
Luisa Barzon ◽  
Elisa Franchin ◽  
Enrico Lavezzo ◽  
Tamás Bakonyi ◽  
...  
Keyword(s):  
West Nile Virus ◽  
Sequence Analysis ◽  
Central Europe ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
West Nile ◽  
Genome Sequence Analysis ◽  
Complete Genome Sequence Analysis ◽  
Virus Strains

scholarly journals Complete Genome Sequences of Zika Virus Strains Isolated from the Blood of Patients in Thailand in 2014 and the Philippines in 2012

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
D. W. Ellison ◽  
J. T. Ladner ◽  
R. Buathong ◽  
M. T. Alera ◽  
M. R. Wiley ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Zika Virus ◽  
Complete Genome ◽  
Homo Sapiens ◽  
The Philippines ◽  
Genome Sequences ◽  
Asian Lineage ◽  
Virus Strains

Here, we present the complete genome sequences of two Zika virus (ZIKV) strains, Zika virus/ Homo sapiens -tc/THA/2014/SV0127-14 and Zika virus/ H. sapiens -tc/PHL/2012/CPC-0740, isolated from the blood of patients collected in Thailand, 2014, and the Philippines, 2012, respectively. Sequencing and phylogenetic analysis showed that both strains belong to the Asian lineage.

scholarly journals Phylogenetic relationships of Western Mediterranean West Nile virus strains (1996–2010) using full-length genome sequences: single or multiple introductions?

2011 ◽  
Vol 92 (11) ◽  
pp. 2512-2522 ◽  
Author(s):  
Elena Sotelo ◽  
Jovita Fernández-Pinero ◽  
Francisco Llorente ◽  
Ana Vázquez ◽  
Ana Moreno ◽  
...  
Keyword(s):  
West Nile Virus ◽  
Evolutionary History ◽  
Phylogenetic Analyses ◽  
Western Mediterranean ◽  
Genome Sequences ◽  
West Nile ◽  
Multiple Introductions ◽  
History Of ◽  
Full Length Genome ◽  
Virus Strains

In recent years, West Nile virus (WNV) has re-emerged in the Western Mediterranean region. As a result, the number of complete WNV genome sequences available from this region has increased, allowing more detailed phylogenetic analyses, which may help to understand the evolutionary history of WNV circulating in the Western Mediterranean. To this aim, the present work describes six new complete WNV sequences from recent outbreaks and surveillance in Italy in 2008–2009 and in Spain in 2008 and 2010. Comparison with other sequences from different WNV clusters within lineage 1 (clade 1a) confirmed that all Western Mediterranean WNV isolates obtained since 1996 (except one from Tunisia, collected in 1997) cluster in a single monophyletic group (here called ‘WMed’ subtype). The analysis differentiated two subgroups within this subtype, which appear to have evolved from earlier WMed strains, suggesting a single introduction in the area, and further dissemination and evolution. Close similarities between WNV variants circulating in consecutive years, one in Spain, between 2007 and 2008, and another in Italy between 2008 and 2009, suggest that the virus possibly overwinters in Western Mediterranean sites. The NS3249-proline genotype, recently proposed as a virulence determinant for WNV, has arisen independently at least twice in the area. Overall, these results indicate that the frequent recurrence of outbreaks caused by phylogenetically homogeneous WNV in the Western Mediterranean since 1996 is consistent with a single introduction followed by viral persistence in endemic foci in the area, rather than resulting from independent introductions from exogenous endemic foci.

Complete genome sequences and phylogenetic analysis of encephalomyocarditis virus strains isolated from pigs and rats origin

2017 ◽  
Vol 55 ◽  
pp. 277-280 ◽  
Author(s):  
Huimin Liu ◽  
Yongtao Li ◽  
Guozhi Zhang ◽  
Siyao Sang ◽  
Chuanqing Wang ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Complete Genome ◽  
Encephalomyocarditis Virus ◽  
Genome Sequences ◽  
Virus Strains

scholarly journals Complete Genome Sequences of Six Measles Virus Strains

2018 ◽  
Vol 6 (13) ◽  
Author(s):  
My V. T. Phan ◽  
Claudia M. E. Schapendonk ◽  
Bas B. Oude Munnink ◽  
Marion P. G. Koopmans ◽  
Rik L. de Swart ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Complete Genome ◽  
Measles Virus ◽  
Genetic Characterization ◽  
Critical Component ◽  
Wild Type ◽  
Genome Sequences ◽  
Virus Strains ◽  
Generation Sequencing

ABSTRACT Genetic characterization of wild-type measles virus (MV) strains is a critical component of measles surveillance and molecular epidemiology. We have obtained complete genome sequences of six MV strains belonging to different genotypes, using random-primed next generation sequencing.

scholarly journals Complete Genome Sequences of Two Newcastle Disease Virus Strains Isolated from a Wild Duck and a Pigeon in Russia

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Marsel R. Kabilov ◽  
Tatyana Y. Alikina ◽  
Kseniya S. Yurchenko ◽  
Alexandra V. Glushchenko ◽  
Konstantin V. Gunbin ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Newcastle Disease Virus ◽  
Disease Virus ◽  
Newcastle Disease ◽  
Complete Genome ◽  
Comparative Sequence Analysis ◽  
Genome Sequences ◽  
Wild Duck ◽  
F Gene ◽  
Virus Strains

Here, we report the complete genome sequences of two Newcastle disease virus (NDV) isolates, Adygea/duck/12/2008, from a wild duck in Russia, and Altai/pigeon/777/2010, from a pigeon in Russia. Based on comparative sequence analysis of the F gene, these strains were classified as NDV class II, genotypes VIId and VIb/2, respectively.

scholarly journals Introductions of West Nile Virus Strains to Mexico

2006 ◽  
Vol 12 (2) ◽  
pp. 314-318 ◽  
Author(s):  
Eleanor Deardorff ◽  
José G. Estrada-Franco ◽  
Aaron C. Brault ◽  
Roberto Navarro-Lopez ◽  
Arturo Campomanes-Cortes ◽  
...  
Keyword(s):  
West Nile Virus ◽  
West Nile ◽  
Virus Strains
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