Genetically defining populations is of limited use for evaluating and managing human impacts on gene flow

2012 ◽  
Vol 39 (4) ◽  
pp. 290 ◽  
Author(s):  
Adam J. Stow ◽  
William E. Magnusson

Partitioning genetic variation into panmictic units is one of the most commonly used techniques in genetic studies of wild organisms. For conservation, the rationale is to identify units for management, most often referred to as populations. Describing these populations provides a measure of genetic differentiation, but they are only management units in relation to specific objectives. In situ conservation activities are mostly constrained to landscape (or ‘seascape’) units. With continuing habitat fragmentation, maintaining gene flow and genetic variation is an underlying objective for many conservation activities. Spatially explicit genetic approaches can describe how gene flow varies across a landscape, but the popular approach of identifying populations has limited and specific application. The statistical tests and sampling procedures used seldom allow for the spatial extent of genetic panmixia to be precisely defined. Gene flow, genetic variation and genetic detection of individual movements can be estimated without reference to populations. Furthermore, the term ‘population’ is used inconsistently in the literature and is often poorly defined. Formulating appropriate questions for management requires that the unit of study is clearly described, and often this could be organisms inhabiting defined areas of the landscape. Resources for conservation management are limited, so geneticists working on gene flow in wild organisms need to frame questions relevant to specific management needs and carefully consider the language and approaches employed.

2009 ◽  
Vol 11 (4) ◽  
pp. 1327-1338 ◽  
Author(s):  
Georg Rathmacher ◽  
Marc Niggemann ◽  
Melanie Köhnen ◽  
Birgit Ziegenhagen ◽  
Ronald Bialozyt

PLoS ONE ◽  
2012 ◽  
Vol 7 (11) ◽  
pp. e49972 ◽  
Author(s):  
Y. Tunginba Singh ◽  
Sudeshna Mazumdar-Leighton ◽  
Mahaswetta Saikia ◽  
Prashant Pant ◽  
Sochanngam Kashung ◽  
...  

Diversity ◽  
2021 ◽  
Vol 13 (11) ◽  
pp. 593
Author(s):  
Maria Manuela Veloso ◽  
Maria Cristina Simões-Costa ◽  
Joana Bagoin Guimarães ◽  
Carla Marques Ribeiro ◽  
Isabel Evaristo ◽  
...  

In this work, using simple sequence repeat (SSR) markers, we present new insights into the genetic diversity, differentiation, and structure of Beta vulgaris subsp. maritima of western Iberia and the Azores and Madeira islands and of B. macrocarpa from southern Portugal. B. macrocarpa occurs only in southern Portugal and frequently in sympatry with B. vulgaris subsp. maritima, showing genetic introgression. B. macrocarpa has a better-defined structure than B. vulgaris subsp. maritima, which has a high degree of admixture. A great differentiation (FST ranging from 0.277 to 0.184) was observed among the northern populations of B. vulgaris subsp. maritima. In contrast, only a small differentiation (FST ranging from 0.000 to 0.026) was detected among the southern B. vulgaris subsp. maritima populations. The inland B. vulgaris subsp. maritima populations (“RIO” and “VMT”) are distinct from each other, which also occurs with the two islands’ populations (“MAD” and “AZO”). The existence of two distinct Atlantic Sea currents can explain the fact that Madeira is related to the southern populations, while the Azores is related to the northern populations. We consider that understanding the relationships existing within Beta spp. is key to future genetic studies and for the establishment of conservation measures. Our results show that the southern coastal areas of Portugal should be considered as a potential site for in situ conservation of the beet wild relatives. Special attention is needed in what concerns B. macrocarpa because this is a rare species that also occurs in a sympatric relationship with B. vulgaris subsp. maritima.


2007 ◽  
Vol 58 (8) ◽  
pp. 733 ◽  
Author(s):  
Nepelle Temby ◽  
Karen Miller ◽  
Craig Mundy

The scale over which populations exchange individuals (migration) is central to ecology, and important for understanding recruitment and connectivity in commercial species. Field studies indicate that blacklip abalone (Haliotis rubra) have localised larval dispersal. However, genetic studies show differentiation only at large scales, suggesting dispersal over more than 100 km. Most genetic studies, however, have failed to test for subdivision at scales equivalent to field experiments. We used microsatellite DNA to investigate genetic structure at small scales (100 m to 10 km) in blacklip abalone in south-east Tasmania. We found significant subdivision (FST = 0.021; P < 0.05) among sites, and hierarchical FST analysis indicated 64% of genetic variation was at the smallest scale, supporting field studies that concluded larval dispersal is less than 100m. We also tested if genetic differentiation varied predictably with wave exposure, but found no evidence that differences between adjacent sites in exposed locations varied from differences between adjacent sites in sheltered populations (mean FST = 0.016 and 0.017 respectively). Our results show the usefulness of microsatellites for abalone, but also identify sampling scales as critical in understanding gene flow and dispersal of abalone larvae in an ecologically relevant framework. Importantly, our results indicate that H. rubra populations are self-recruiting, which will be important for the management of this commercial species.


2018 ◽  
Vol 47 (2) ◽  
pp. 339-346 ◽  
Author(s):  
Mengxue MA ◽  
Xiang DONG ◽  
Kuo LIAO ◽  
Fei HAO ◽  
Rui QIN ◽  
...  

In this study, mating system, genetic diversity, and genetic structure of the endangered endemic aquatic Isoetes yunguiensis in China was investigated using ISSR markers. The results of ISSR analyses showed that the estimate of multilocus outcrossing rate (tm) was high at species level (tm = 0.955), indicating that diploid I. yunguiensis is a predominant outcrossing species. Nine selected ISSR primers used in the study amplified 66 reproducible bands, 41 of which were polymorphic among 37 individuals. High level of genetic diversity was detected at the species level (PPB = 62.12%), whereas, relatively low genetic diversity existed within populations (PPB = 39.39%). Analysis of molecular variance (AMOVA) revealed that 31.99% of the genetic variation was attributable to differences between populations and the rest (68.01%) to variability within populationsof I. yunguiensis. Value of Fst (0.320) indicated that genetic differentiation between populations also was significant. These results showed that I. yunguiensis predominantly favors crossing, and has a high level of genetic diversity and highly significant genetic variation between and within populations. Gene flow (Nm) among populations is equal to 1.177. High outcrossing rates may be responsible for the high levels of genetic diversity observed in the I. yunguiensis population. To maintain the current level of genetic diversity for this species, we recommend increasing in situ conservation sites.


FLORESTA ◽  
2018 ◽  
Vol 48 (4) ◽  
pp. 503 ◽  
Author(s):  
Elenice Fritzsons ◽  
Marcos Silveira Wrege ◽  
Luiz Eduardo Mantovani

The natural presence of Araucaria angustifolia (Bert) O. Kuntze is associated with several climatic aspects, but the relative importance of each of them has not been sufficiently explored yet. The objective of this study was to identify climatic aspects that are most related to the presence of the species in the state of Santa Catarina, Brazil. For this purpose, meteorological stations from the municipalities were separated into: places with records of natural occurrence of araucaria; and places without records of the species. Temperature, precipitation and insolation data from these stations were employed, and they were subjected to several univariate and multivariate statistical tests to identify the climates in which araucaria preferentially develop. All the areas presented surplus water, and the insolation hours did not present significant differences. The areas where the araucaria occurred were also separated into three subgroups: two in the Southern Plateau; and one in the highest western sides of the state. These areas were climatically different regarding precipitation, evapotranspiration, and water availability. Finally, we concluded that the araucaria occurs in places where the average temperatures are lower and the annual rainfall and the winter period rainfall are higher. The results generated by cluster analysis indicated the prospection conditions for in situ conservation purposes. Also, it would assist in the elaboration of breeding programs.


2020 ◽  
Vol 6 (1) ◽  
Author(s):  
Elly Lestari Rustiati ◽  
Priyambodo Priyambodo ◽  
Yanti Yulianti ◽  
Eko Agus Srihanto ◽  
Dian Neli Pratiwi ◽  
...  

Way Kambas National Park (WKNP) is home of five protected big mammals including sumatran elephants.  It shares its border with 22 of 37 villages surrounding the national park.  Understanding their existence in the wild is a priority, and  wildlife genetics is a crucially needed. Besides poaching and habitat fragmentation, wildlife-human conflict is one big issue.  Elephant Training Center (ETC) in WKNP is built for semi in-situ conservation effort on captive sumatran elephants that mainly have conflict histories with local people.  Participative observation and bio-molecular analysis were conducted to learn the importance of captive Sumatran elephant for conservation effort.  Through captive sumatran elephants, database and applicable methods are expected to be developed supporting the conservation of their population in the wild.  Participative observation and molecular identification was carried on captive sumatran elephants in ETC, WKNP under multiple year Terapan grant of Ministry of Research and Technology Higher Education, Indonesia. Gene sequence and cytological analyses showed that the captive sumatran elephants are closely related and tend to be domesticated.  Translocation among ETC to avoid inbreeding, and maintaining the captive sumatran elephant as natural as possible are highly recommended. Developing genetic database can be a reference for both captive and wild sumatran elephants.


2013 ◽  
Vol 357-360 ◽  
pp. 2118-2121
Author(s):  
Ling Li Jia ◽  
Heng Cui

In the process of land consolidation in Chengdu Plain, Linpan protection is an important content. At present, some protection types of Linpan have been formed in Chengdu area, such as agriculture, rural tourism, special industry and settlement type and so on. Many protected modes were explored, such as the natural subsidies, in situ conservation, comprehensive development, off-site reconstruction, etc. But there are still some questions, do not pay attention to protect Linpan ecological pattern plate function transformation, the architectural style of hybrid, protection methods are not flexible, evaluation standard is not perfect, the public participation is not enough and other issues, these problems need to be continuously optimized and improved in the future.


Agronomy ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 638
Author(s):  
Marcelo B. Medeiros ◽  
José F. M. Valls ◽  
Aluana G. Abreu ◽  
Gustavo Heiden ◽  
Suelma Ribeiro-Silva ◽  
...  

This study presents the status of ex situ and in situ conservation for the crop wild relatives of rice, potato, sweet potato, and finger millet in Brazil, and the subsequent germplasm collection expeditions. This research is part of a global initiative entitled “Adapting Agriculture to Climate Change: Collecting, Protecting, and Preparing Crop Wild Relatives” supported by the Global Crop Diversity Trust. Species of the primary, secondary, and tertiary gene pools with occurrences reported in Brazil were included: Oryza alta Swallen, O. grandiglumis (Döll) Prod., O. latifolia Desv., O. glumaepatula Steud., Eleusine tristachya (Lam.) Lam., E. indica (L.) Gaertn., Solanum commersonii Dunal, S. chacoense Bitter, Ipomoea grandifolia (Dammer) O’Donell, I. ramosissima (Poir.) Choisy, I. tiliacea (Willd.) Choisy, I. triloba L., and I. cynanchifolia Meisn. The status of the ex situ and in situ conservation of each taxon was assessed using the gap analysis methodology, and the results were used to plan 16 germplasm collection expeditions. Seeds of the collected material were evaluated for viability, and the protocols for seed germination and cryopreservation were tested. The final conservation score, resulting from the gap analysis and including the average of the ex situ and in situ scores, resulted in a classification of medium priority of conservation for all the species, with the exception of I. grandifolia (high priority). The total accessions collected (174) almost doubled the total accessions of these crop wild relatives incorporated in Embrapa’s ex situ conservation system prior to 2015. In addition, accessions for practically absent species were collected for the ex situ conservation system, such as Ipomoea species, Eleusine indica, and Solanum chacoense. The methods used for dormancy breaking and low temperature conservation for the Oryza, Eleusine, and Ipomoea species were promising for the incorporation of accessions in the respective gene banks. The results show the importance of efforts to collect and conserve ex situ crop wild relatives in Brazil based on previous gap analysis. The complementarity with the in situ strategy also appears to be very promising in the country.


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