Molecular data consistently recover a 'Queensland clade' of Synostemon Phyllanthaceae, Phyllantheae) with distinctive floral morphology

2014 ◽  
Vol 27 (6) ◽  
pp. 450 ◽  
Author(s):  
Ian R. H. Telford ◽  
Kanchana Pruesapan ◽  
Peter C. van Welzen ◽  
Jeremy J. Bruhl
Keyword(s):  
Molecular Analysis ◽  
Floral Morphology ◽  
Sequence Data ◽  
Conservation Status ◽  
Molecular Data ◽  
New Combination ◽  
Its Sequence

Molecular analysis of the newly reinstated genus Synostemon F.Muell. (Phyllanthaceae, Phyllantheae), using ITS sequence data from the now densely sampled genus, confirmed that the previously recognised ‘Queensland clade’ consists of Synostemon albiflorus (F.Muell. ex Müll.Arg.) Airy Shaw, S. sphenophyllus Airy Shaw, Sauropus podenzanae (S.Moore) Airy Shaw and the undescribed Synostemon spinescens, sp. nov. ined., the latter being validated here as S. spinosus I.Telford & J.J.Bruhl. Morphological synapomorphies for the clade are as follows: linear, apiculate anthers that are connivent but only basally connate, and thickened, clavate, recurved stigmas. A new combination is provided under Synostemon for Sauropus podenzanae as Synostemon podenzanae (S.Moore) I.Telford & Pruesapan and Sauropus convallarioides J.T.Hunter & J.J.Bruhl is formally placed in synonymy under Synostemon sphenophyllus. Descriptions, distributional data and notes on ecology and conservation status are provided for these species. Phyllanthus albiflorus F.Muell. ex Müll.Arg., the basionym of Synostemon albiflorus, is lectotypified.

Morphological and molecular data show Synostemon trachyspermus (Phyllanthaceae, Phyllantheae) to be a heterogeneous species assemblage

2016 ◽  
Vol 29 (3) ◽  
pp. 218 ◽  
Author(s):  
Ian R. H. Telford ◽  
Kanchana Pruesapan ◽  
Peter C. van Welzen ◽  
Jeremy J. Bruhl
Keyword(s):  
Western Australia ◽  
Sequence Data ◽  
Conservation Status ◽  
Molecular Data ◽  
New Combination ◽  
Species Assemblage ◽  
Dna Sequence Data ◽  
The North ◽  
Morphological Studies ◽  
Morphological And Molecular Data

Synostemon trachyspermus (F.Muell.) I.Telford & Pruesapan (Phyllanthaceae, Phyllantheae) is shown, by morphological studies and phylogenetic analysis using nrITS DNA sequence data, to be a heterogeneous species assemblage of four species. Phyllanthus rhytidospermus F.Muell. ex Müll.Arg., with a new combination provided as Synostemon rhytidospermus (F.Muell. ex Müll.Arg.) I.Telford & Pruesapan, and Sauropus hubbardii Airy Shaw, with a new combination as Synostemon hubbardii (Airy Shaw) I.Telford & Pruesapan, are re-instated as species. Phyllanthus arnhemicus S.Moore is lectotypified and placed in synonomy under Synostemon lissocarpus (S.Moore) I.Telford & Pruesapan, which is the new combination provided for Phyllanthus lissocarpus S.Moore (syn. Sauropus lissocarpus (S.Moore) Airy Shaw). Synostemon umbrosus I.Telford & J.J.Bruhl, a rare endemic from the Kimberley, Western Australia, is named as new. The newly described S. hamersleyensis I.Telford & Naaykens, endemic to the Pilbara, Western Australia, and the north-eastern Queensland endemic Sauropus aphyllus J.T.Hunter & J.J.Bruhl are shown to be closely related; the new combination Synostemon aphyllus (J.T.Hunter & J.J.Bruhl) I.Telford & Pruesapan is provided for the latter. Sauropus sp. A of Flora of the Kimberley Region, previously included within S. trachyspermus sens.lat., shows a more distant relationship and is named as Synostemon judithae I.Telford & J.J.Bruhl. Notes on distribution, habitat, phenology, conservation status, photomicrographs of seeds and a key to identification of the species are provided.

scholarly journals Morpho-molecular analysis reveals Appendiculella viticis sp. nov. (Meliolaceae)

Phytotaxa ◽  
2020 ◽  
Vol 454 (1) ◽  
pp. 45-54
Author(s):  
DIANA S. MARASINGHE ◽  
SARANYAPHAT BOONMEE ◽  
KEVIN D. HYDE ◽  
NING XIE ◽  
SINANG HONGSANAN
Keyword(s):  
Phylogenetic Analysis ◽  
Molecular Analysis ◽  
Sequence Data ◽  
Novel Species ◽  
Molecular Data ◽  
Its Sequence ◽  
Morphological Comparison ◽  
Fallen Leaves

A novel species, Appendiculella viticis, was collected on freshly fallen leaves of Vitex canescens (Lamiaceae) in Chiang Rai, Thailand. This species is unique in having vertically striate, conoid cells, without larviform appendages and fusiform to ellipsoidal, guttulate ascospores. Morphological comparison and phylogenetic analysis of combined LSU and ITS sequence data provide evidence that the species is novel. Morphological comparisons of Appendiculella species are provided. The molecular data provides evidence to support the distinctness of Appendiculella.

Higher-level relationships among the eucalypts are resolved by ITS-sequence data

2002 ◽  
Vol 15 (1) ◽  
pp. 49 ◽  
Author(s):  
Dorothy A. Steane ◽  
Dean Nicolle ◽  
Gay E. McKinnon ◽  
René E. Vaillancourt ◽  
Brad M. Potts
Keyword(s):  
Internal Transcribed Spacer ◽  
Sequence Data ◽  
Its Region ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
Its Sequence ◽  
Phylogenetic Groups ◽  
Single Section ◽  
Western Australian ◽  
Genus Eucalyptus

This expanded survey of ITS sequences represents the largest analysis of molecular data ever attempted on Eucalyptus. Sequences of the internal transcribed spacer (ITS) region of the nuclear ribosomal DNA were included in an analysis of 90 species of Eucalyptus s.s. and 28 species representing eight other genera (Allosyncarpia, Angophora, Arillastrum, Corymbia, Eucalyptopsis, Stockwellia, Lophostemon and Metrosideros). The results of the study indicate that Angophora and Corymbia form a well-supported clade that is highly differentiated from Eucalyptus s.s. Corymbia species are divided between two clades, one of which may be the sister to Angophora. Allosyncarpia, Arillastrum, Eucalyptopsis and ‘Stockwellia’ are also highly differentiated from Eucalyptus s.s. If the genus Eucalyptus is to be expanded to include Angophora and Corymbia(sensu Brooker 2000), ITS data suggest that Allosyncarpia, Eucalyptopsis, ‘Stockwellia’ and potentially Arillastrum should also be included in Eucalyptus s.l. The ITS data suggest that subg. Symphyomyrtus is paraphyletic and that subg. Minutifructus should be included within it. Within subg.Symphyomyrtus, only sect. Maidenaria appears to be monophyletic. Sections Adnataria and Dumaria are probably monophyletic; sections Exsertaria and Latoangulatae are very close and probably should be combined in a single section. Section Bisectae is polyphyletic and is divided into two distinct lineages. The phylogenetic groups depicted by ITS data are consistent with the frequency of natural inter-specific hybridisations as well as data from controlled crosses within subgenus Symphyomyrtus. The ITS data illustrate that subg. Idiogenes and western Australian monocalypts are early evolutionary lines relative to E. diversifolia, E. rubiginosa (monotypic subg. Primitiva) and the eastern monocalypts and that subg. Primitiva should be sunk into subg. Eucalyptus. Subgenus Eudesmia may be monophyletic, grouping with subgenera Idiogenes and Eucalyptus. Further work is required to confirm the phylogenetic positions of the monotypic subgenera Alveolata, Cruciformes, Acerosae and Cuboidea.

Molecular data allow to elucidate the taxonomic placement of some Umbelliferae from Middle Asia and Afghanistan (Pinacantha, Ladyginia, Peucedanum mogoltavicum)

Phytotaxa ◽  
2018 ◽  
Vol 350 (1) ◽  
pp. 42 ◽  
Author(s):  
GALINA V. DEGTJAREVA ◽  
MICHAEL G. PIMENOV ◽  
TAHIR H. SAMIGULLIN
Keyword(s):  
Phylogenetic Tree ◽  
Dna Sequence ◽  
Sequence Data ◽  
Molecular Data ◽  
Systematic Position ◽  
New Combination ◽  
Dna Sequence Data ◽  
Middle Asia ◽  
Molecular Phylogenetic Tree ◽  
Molecular Phylogenetic

The systematic position of three Apiaceae-Apioideae taxa, Pinacantha porandica, Ladyginia bucharica and Peucedanum mogoltavicum, from Middle Asia and Afghanistan, is clarified based on nrITS DNA sequence data. In the molecular phylogenetic tree, the monotypic Pinacantha is placed in unresolved position within the Ferulinae. Although there is no morphological information on essential characters, we propose a new position of Pinacantha porandica within the genus Ferula. As a result a new combination Ferula porandica is proposed, with a new section Pinacantha to accommodate it. The attribution of Peucedanum mogoltavicum to Ferula has been confirmed, its correct name being Ferula lithophila. The genus Ladyginia should not be included in Ferula, its closest relatives being Mozaffariania and Glaucosciadium from the Glaucosciadium Clade.

scholarly journals Molecular evolutionary relationships of Euphorbia scordifolia Jacq. within the genus inferred from analysis of internal transcribed spacer sequences

2015 ◽  
Vol 22 (2) ◽  
pp. 111-118 ◽  
Author(s):  
Fahad M.A. Al-Hemaid ◽  
M. Ajmal Ali ◽  
Joongku Lee ◽  
Soo-Yong Kim ◽  
Md. Oliur Rahman
Keyword(s):  
Sequence Data ◽  
Sequence Similarity ◽  
Molecular Data ◽  
Internal Transcribed Spacers ◽  
Nuclear Ribosomal Dna ◽  
Evolutionary Relationships ◽  
Local Alignment ◽  
Its Sequence ◽  
Molecular Phylogenetic ◽  
Plant Taxon

The present study explored molecular phylogenetic analysis of 28 species of Euphorbia L. for the identification and establishment of molecular evolutionary relationships of Euphorbia scordifolia Jacq. within the genus based on the internal transcribed spacers (ITS) sequences (ITS1-5.8S-ITS2) of nuclear ribosomal DNA (nrDNA). The sequence similarity search using Basic Local Alignment Search Tool (BLAST) of the ITS sequence of E. scordifolia showed the closest sequence similarity to E. supina Raf. The analysis of ITS sequence data revealed four major clades consistent with subgeneric classifications of the genus. Molecular data support placement of E. scordifolia in the subgenus Chamaesyce.Bangladesh J. Plant Taxon. 22(2): 111-118, 2015 (December)

Molecular phylogeny and status of Diploicia and Diplotomma, with observations on Diploicia subcanescens and Diplotomma rivas-martinezii

2002 ◽  
Vol 34 (6) ◽  
pp. 509-519 ◽  
Author(s):  
María del Carmen Molina ◽  
Ana Crespo ◽  
Oscar Blanco ◽  
Néstor Hladun ◽  
David L. Hawksworth
Keyword(s):  
Molecular Phylogeny ◽  
Sequence Data ◽  
Molecular Data ◽  
Rdna Sequence ◽  
Its Rdna ◽  
New Combination ◽  
Success Rates ◽  
Species Pair ◽  
Monophyletic Clade ◽  
Rdna Sequence Data

AbstractITS rDNA sequence data shows that Diploicia and Diplotomma species form a monophyletic clade distinct from other Buellia species. This indicates that Diplotomma merits acceptance as a genus, and suggests that Diploicia should be treated as a synonym of Diplotomma, the earlier name. The data also shows Diploicia subcanescens, considered the fertile counterpart in a species pair with D. canescens, is nested within D. canescens and should be treated as a synonym despite reported chemical differences. In addition, the molecular data support the distinctness of Diplotomma rivas-martinezii, a species restricted to gypsum rocks in Spain, from the widespread D. venustum, which grows on calcareous rocks. Aposymbiotic cultures suggest that D. rivas-martinezii also differs from D. venustum in its germination and isolation success rates. One new combination is made: Diplotomnta pulverulenta (Anzi) D. Hawksw. (syn. Abrothallus pulverulentus Anzi) for the lichenicolous species previously known as Buellia pulverulenta.

scholarly journals Morphological and Phylogenetic Appraisal of Novel and Extant Taxa of Stictidaceae from Northern Thailand

2021 ◽  
Vol 7 (10) ◽  
pp. 880
Author(s):  
De-Ping Wei ◽  
Dhanushka N. Wanasinghe ◽  
Eleni Gentekaki ◽  
Vinodhini Thiyagaraja ◽  
Saisamorn Lumyong ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Sequence Data ◽  
Molecular Data ◽  
New Combination ◽  
Morphological Evidence ◽  
Fungal Adaptation ◽  
Drought Resistant ◽  
Morphological And Molecular Data ◽  
A New Species

Stictidaceae comprises taxa with diverse lifestyles. Many species in this family are drought resistant and important for studying fungal adaptation and evolution. Stictidaceae comprises 32 genera, but many of them have been neglected for decades due to the lack of field collections and molecular data. In this study, we introduce a new species Fitzroyomyces hyaloseptisporus and a new combination Fitzroyomycespandanicola. We also provide additional morphological and molecular data for Ostropomyces pruinosellus and O. thailandicus based on new collections isolated from an unidentified woody dicotyledonous host in Chiang Rai, Thailand. Taxonomic conclusions are made with the aid of morphological evidence and phylogenetic analysis of combined LSU, ITS and mtSSU sequence data. Characteristics such as the shape and septation of ascospores and conidia as well as lifestyles among genera of Stictidaceae are discussed.

Bush peas: a rapid radiation with no support for monophyly of Pultenaea (Fabaceae: Mirbelieae)

2005 ◽  
Vol 18 (2) ◽  
pp. 133 ◽  
Author(s):  
L. A. Orthia ◽  
M. D. Crisp ◽  
L. G. Cook ◽  
R. P. J. de Kok
Keyword(s):  
Sequence Data ◽  
Molecular Data ◽  
Its Sequence ◽  
Nrdna Its ◽  
Rapid Radiation ◽  
Nuclear Genomes ◽  
Phylogenetic Hypotheses ◽  
Expanded Concept

Phylogenetic hypotheses are presented for Pultenaea based on cpDNA (trnL–F and ndhF) and nrDNA (ITS) sequence data. Pultenaea, as it is currently circumscribed, comprises six strongly supported lineages whose relationships with each other and 18 closely related genera are weak or conflicting among datasets. The lack of resolution among the six Pultenaea clades and their relatives appears to be the result of a rapid radiation, which is evident in molecular data from both the chloroplast and nuclear genomes. The molecular data provide no support for the monophyly of Pultenaea as it currently stands. Given these results, Pultenaea could split into many smaller genera. We prefer the taxonomically stable alternative of subsuming all 19 genera currently recognised in Pultenaea sensu lato (= the Mirbelia group) into an expanded concept of Pultenaea that would comprise ~470 species.

Monochaetia ilexae sp. nov. (Pestalotiopsidaceae) from Yunnan Province in China

Phytotaxa ◽  
2017 ◽  
Vol 291 (2) ◽  
pp. 123 ◽  
Author(s):  
NIMALI I. DE SILVA ◽  
RUNGTIWA PHOOKAMSAK ◽  
SAJEEWA S. N MAHARACHCHIKUMBURA ◽  
KASUN M. THAMBUGALA ◽  
DARBHE J. BHAT ◽  
...  
Keyword(s):  
Morphological Traits ◽  
Yunnan Province ◽  
Sequence Data ◽  
Molecular Data ◽  
Its Sequence ◽  
Main Clade ◽  
Similar Range ◽  
Morphological Differences ◽  
A New Species ◽  
High Support

Monochaetia is a pestalotiopsis-like genus characterized by 3–5-septate hyaline to brown conidia with single apical and basal appendages. Monochaetia species exhibit diverse conidial morphology, but many species lack molecular data and thus it is not clear if the genus is monophyletic. In this paper, combined LSU and ITS sequence data and morphological traits are used to introduce a new Monochaetia species, M. ilexae from Yunnan Province, China from dead leaves of Ilex species. Monochaetia ilexae shares similar morphology with the type, M. monochaeta and M. kansensis having fusiform conidia and has a similar range of conidia. However M. ilexae differs from M. monochaeta and M. kansensis having different conidia length, apical and basal appendage lengths. Phylogeny agrees with morphological differences allowing Monochaetia ilexae as a new species that clusters with Monochaetia species, but is separated from the main clade with high support.

­­­Laccaria rubroalba sp. nov. (Hydnangiaceae, Agaricales) from Southwestern China

Phytotaxa ◽  
2016 ◽  
Vol 284 (1) ◽  
pp. 41 ◽  
Author(s):  
XIA LUO ◽  
LEI YE ◽  
JIE CHEN ◽  
SAMANTHA C. KARUNARATHNA ◽  
JIANCHU XU ◽  
...  
Keyword(s):  
New Species ◽  
Sequence Data ◽  
Novel Species ◽  
Morphological Characteristics ◽  
Molecular Data ◽  
Southwestern China ◽  
Its Sequence ◽  
The Novel ◽  
Closely Related Species ◽  
Line Drawings

The novel species Laccaria rubroalba is described from Southwestern China by using both morphological characteristics and molecular data. It is characterized by small basidiomata; reddish white pileus when moist or young, white to pale when dry; 4-spored basidia and globose to broadly ellipsoid, hyaline, moderately echinulate basidiospores. Phylogenetic relationships inferred from ITS sequence data confirmed the separation of this new species from other closely related species in the genus Laccaria. The new species is compared with similar taxa. A description, line drawings and colour photographs of the new species, and phylogenetic tree to show the placement of the new species are provided.

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