Molecular barcoding of north-east Atlantic deep-water sharks: species identification and application to fisheries management and conservation

2008 ◽  
Vol 59 (3) ◽  
pp. 214 ◽  
Author(s):  
Teresa Moura ◽  
Mónica C. Silva ◽  
Ivone Figueiredo ◽  
Ana Neves ◽  
Pablo Durán Muñoz ◽  
...  
Keyword(s):  
Deep Water ◽  
Objective Assessment ◽  
Dna Barcode ◽  
Coi Gene ◽  
Shark Species ◽  
Identification Problems ◽  
East Atlantic ◽  
Molecular Barcoding ◽  
North East ◽  
The North

Two genera of elasmobranchii, Centrophorus and Centroscymnus, include species that represent the highest landings of deep-water sharks caught by fishing fleets operating in the north-east Atlantic. There are morphology-based identification problems among and within genera, and landings of processed shark products further prevent an objective assessment of these species. The present study is the first attempt to test the suitability of using a DNA barcode approach to discriminate accurately among the four most important commercial deep-water shark species: Centrophorus squamosus, Centrophorus granulosus, Centroscymnus coelolepis and, recently discovered in Portuguese ports, Centroscymnus owstoni. Sequence analyses of the mitochondrial DNA cytochrome c oxidase subunit I (COI) gene revealed low levels of haplotypic and genetic diversities. Higher levels of inter-specific relative to intra-specific divergences allowed discrimination among species, which form reciprocally monophyletic clades. Inclusion of published COI sequences from other species within the same genera revealed haplotype sharing among species, which calls into question the current taxonomy and accuracy of fisheries data available. Amplification of the COI gene coupled with MboI restriction digests was found to be a fast and inexpensive strategy to resolve within genera identification problems. Molecular barcoding constitutes a critical tool for the assessment and implementation of urgent management policies for this group of species.

scholarly journals A review of Norwegian streptaster-bearing Astrophorida (Porifera: Demospongiae: Tetractinellida), new records and a new species

Zootaxa ◽  
2012 ◽  
Vol 3253 (1) ◽  
pp. 1 ◽  
Author(s):  
PACO CÁRDENAS ◽  
HANS TORE RAPP
Keyword(s):  
Cytochrome C ◽  
Coi Gene ◽  
East Atlantic ◽  
North West ◽  
North East ◽  
The North ◽  
New Material ◽  
Distinct Morphology ◽  
Partial Fragment ◽  
A New Species

We report and describe new material of streptaster-bearing Astrophorida sponges collected in Norway: Characellapachastrelloides, Pachastrella nodulosa sp. nov., Poecillastra compressa, Vulcanella cf. aberrans, Thenea abyssorum,Thenea levis, Thenea muricata and Thenea valdiviae. Because many of these species were described in the end of the 19thcentury their original descriptions are often incomplete. The Norwegian specimens are the basis for a revision of themorphology, taxonomy and distribution of these species. These are the first records of C. pachastrelloides and V. cf.aberrans from the Norwegian coast. Pachastrella nodulosa sp. nov. differs from Pachastrella monilifera by (i) its knobbysurface and (ii) the absence of large oxeas, (iii) its amphiasters have on average less actines and are less spiny, finally (iv)microxeas are rare and with a distinct morphology (although there is some doubt concerning their origin). In the presentstudy, Characella tuberosa (from South Africa), Pachastrella abyssi (from the North-West Atlantic) and Thenea schmidti(from the North-East Atlantic) are resurrected. To help their future identifications, all the Norwegian species describedwere associated with DNA barcodes: a cytochrome c oxidase subunit I (COI) gene partial fragment and/or a 28S ribosomalgene partial fragment (C1–D2 domains). Furthermore, a key to the streptaster-bearing Astrophorida of the North-East Atlantic and the Mediterranean Sea is also given (lithistids not included).Nous signalons la présence et décrivons des spécimens d’Astrophorida à streptasters nouvellement récoltés en Norvège:Characella pachastrelloides, Pachastrella nodulosa sp. nov., Poecillastra compressa, Vulcanella cf. aberrans, Theneaabyssorum, Thenea levis, Thenea muricata et Thenea valdiviae. Plusieurs de ces espèces ont été décrites de manièreincomplète à la fin du 19ème siècle. Les spécimens norvégiens sont l’occasion de réviser la morphologie, la taxonomie etla distribution de ces espèces. C’est la première fois que C. pachastrelloides et V. cf. aberrans sont mentionnés sur la côtenorvégienne. Pachastrella nodulosa sp. nov. se distingue de Pachastrella monilifera par (i) sa surface noduleuse et (ii)l’absence de grands oxes, (iii) ses amphiasters ont en moyenne moins d’actines et sont moins épineux, enfin (iv) lesmicroxes sont rares et ont une morphologie distincte (bien qu’il y ait encore des doutes sur leur origine). Au cours de notreétude, Characella tuberosa (d’Afrique du Sud), Pachastrella abyssi (de l’Atlantique Nord-Ouest) et Thenea schmidti (del’Atlantique Nord-Est) sont ressuscités. Afin d’aider leurs identifications futures, toutes les espèces de Norvège décritesont été associées à des code-barres moléculaires: un fragment partiel du gène de la sous-unité I du cytochrome c oxydase(COI) et/ou un fragment partiel du gène ribosomique 28S (domaines C1-D2). De plus, une clé pour identifier les Astrophorida à streptasters de l’Atlantique Nord-Est et de Méditerrannée est également fournie (lithistides non inclus).

Reproductive patterns in two deep-water solitary corals from the north-east Atlantic—Flabellum alabastrumandF. angulare(Cnidaria: Anthozoa: Scleractinia)

2010 ◽  
Vol 91 (3) ◽  
pp. 669-675 ◽  
Author(s):  
Rhian G. Waller ◽  
Paul A. Tyler
Keyword(s):  
Sex Ratio ◽  
Deep Water ◽  
Oocyte Size ◽  
East Atlantic ◽  
Broadcast Spawning ◽  
Reproductive Patterns ◽  
Size Dependent ◽  
North East ◽  
The North ◽  
Rockall Trough

Gametogenesis and reproductive periodicity of the solitary scleractiniansFlabellum alabastrum(from the Rockall Trough) andF. angulare(from the Porcupine Seabight) were investigated. Samples were collected between depths from 1370 to 2190 m forF. alabastrumand 2412 to 2467 m forF. angulare. Both species showed gonochorism with a 1:1 sex-ratio and broadcast spawning of gametes is inferred from the lack of brooded planulae. Oocyte sizes were large in both species (925 μm inF. alabastrumand 1015 μm inF. angulare), suggesting lecithotrophic larval development. Fecundity and periodicity of oocyte development differed between the two species.Flabellum alabastrumproduced a maximum of 2800 oocytes per polyp quasi-continuously, whereas the deeper speciesF. angulareproduced a maximum of 550 oocytes per polyp either seasonally or periodically. Both species showed size-dependent fecundity. The data show a decrease in oocyte size and fecundity with depth, in concordance with other deep-water scleractinian species.

Ophlitaspongia and Ophlitaspongia papilla reinstated, and a new species of Ophlitaspongia described (Porifera: Demospongiae: Microcionidae)

1999 ◽  
Vol 79 (4) ◽  
pp. 609-620 ◽  
Author(s):  
C.M. Howson ◽  
S.J. Chambers
Keyword(s):  
New Species ◽  
North Atlantic ◽  
Deep Water ◽  
The Other ◽  
East Atlantic ◽  
Halichondria Panicea ◽  
North East ◽  
The North ◽  
The North Atlantic ◽  
A New Species

A new species of Ophlitaspongia (Porifera: Microcionidae) from wave-exposed sublittoral rock in the north-east Atlantic is described and compared to the two other species recorded from the genus in the north-east Atlantic. The species known as Ophlitaspongia seriata is considered to be a junior synonym of Halichondria panicea. Consequently, the name O. papilla has been reinstated. The other recorded species O. basifixa, is from deep water. Ophlitaspongia basifixa has characters which differentiate it from Ophlitaspongia sp. nov. The genus Ophlitaspongia has been separated from related genera and reinstated for species in the North Atlantic.

Records of deep water chondrichthyan fish caught on long-line in the Rockall Trough

2000 ◽  
Vol 80 (2) ◽  
pp. 377-378 ◽  
Author(s):  
M.W. Clarke
Keyword(s):  
North Atlantic ◽  
Deep Water ◽  
Zoological Museum ◽  
East Atlantic ◽  
North East ◽  
The North ◽  
Long Line ◽  
Rockall Trough ◽  
Line Survey ◽  
Depth Ranges

A number of chondrichthyan fish species were caught on long-line in the Rockall Trough (north-east Atlantic) in 1997, which are first records for this area; Raja hyperborea, Raja kukujevi and Raja fullonica. The occurrence of R. hyperborea, usually found in colder boreal waters appears to be temperature related. The presence of the deep water squaliform shark Centrophorus uyato in the area was also confirmed and several species were caught at previously undocumented depths.The Rockall Trough is an extension of the North Atlantic deep environment (Mauchline, 1990). A long-line survey was undertaken in August 1997 on the eastern and southern slopes of the Rockall Trough (Figure 1), fishing gear and procedures are described by Connolly (1997). Identifications were undertaken by means of several texts (Compagno, 1984; Whitehead, et al., 1984; Stehmann, 1997). The specimens described below were lodged in the National Museum of Ireland (NMI) and the Hamburg University Zoological Museum, Germany (ZMH). Depth ranges, positions and catalogue numbers of the specimens described are given in Table 1.

Assemblages of deepwater shark species along the north east Atlantic continental slope

2020 ◽  
Vol 157 ◽  
pp. 103207
Author(s):  
Brendan O' Hea ◽  
Sarah Davie ◽  
Graham Johnston ◽  
Leonie O’ Dowd
Keyword(s):  
Continental Slope ◽  
Shark Species ◽  
East Atlantic ◽  
North East ◽  
The North

The distribution of the coral Lophelia pertusa (L.) [L. prolifera (Pallas)] in the north-east Atlantic

1979 ◽  
Vol 59 (1) ◽  
pp. 149-164 ◽  
Author(s):  
J. B. Wilson
Keyword(s):  
Deep Water ◽  
Lophelia Pertusa ◽  
East Atlantic ◽  
North East ◽  
The North ◽  
Water Coral

A compilation has been made of new data on the distribution of the deep-water coralLophelia pertusa(L.) derived from trawling records, grab and dredge stations and submersible dives, together with the few published records. The coral is widely distributed and occurs on all the offshore banks of the north-east Atlantic, with some records from the deepest water of the Minches and Sea of the Hebrides.

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