scholarly journals Hypotheses from mitochondrial DNA: congruence and conflict between DNA sequences and morphology in Dolichopodinae systematics (Diptera:Dolichopodidae)

2010 ◽  
Vol 24 (1) ◽  
pp. 32 ◽  
Author(s):  
Marc Pollet ◽  
Christoph Germann ◽  
Samuel Tanner ◽  
Marco Valerio Bernasconi
Keyword(s):  
Phylogenetic Analysis ◽  
Mitochondrial Dna ◽  
Molecular Analysis ◽  
Dna Sequences ◽  
Morphological Characters ◽  
Species Group ◽  
Data Matrix ◽  
Cyt B ◽  
Molecular Phylogenetic ◽  
Species Groups

The molecular phylogeny of the subfamily Dolichopodinae (Diptera : Dolichopodidae) is reconstructed based on 79 species of 7 dolichopodine genera as ingroup, and 10 non-dolichopodine species from different genera as outgroup. A Bayesian analysis based on a mitochondrial DNA dataset consisting of 1702 characters (COI : 810; 12S : 366; 16S : 526) was carried out. Genital and non-genital morphological characters from a hitherto unpublished data matrix (based on 57 Dolichopodidae species) were used to explain and support the lineages hypothesised by our molecular phylogenetic analysis. The monophyly of the subfamily Dolichopodinae, and of the genera Dolichopus and Gymnopternus, was confirmed. The molecular analysis yielded nine species groups in Dolichopus that were proposed in previous studies using COI and Cyt-b. No evidence was found to support a clade including Dolichopus, Ethiromyia, and Gymnopternus. The genus Hercostomus proved polyphyletic with respect to Poecilobothrus, Sybistroma, and Gymnopternus. The following lineages were represented by strongly supported clades: Hercostomus germanus species group, H. vivax species group, H. nigrilamellatus species group, H. plagiatus species group, H. longiventris species group, H. fulvicaudis species group, and Poecilobothrus, Gymnopternus, Tachytrechus and Sybistroma (including Hercostomus nanus and H. parvilamellatus). Two clades that were previously established on the basis of morphology were confirmed in our phylogenetic analysis: (i) Poecilobothrus and the flower-feeding Hercostomus germanus species group, and (ii) the H. longiventris lineage and Sybistroma. In most cases, the groups identified in the molecular analysis could be supported and explained by morphological characters. Species of the Hercostomus germanus species group, Poecilobothrus, the Hercostomus longiventris species group, and a Sybistroma subclade have a similar microhabitat affinity.

Phylogenetic framework for Dioryctria (Lepidoptera: Pyralidae: Phycitinae) based on combined analysis of mitochondrial DNA and morphology

2005 ◽  
Vol 137 (6) ◽  
pp. 685-711 ◽  
Author(s):  
Yanli Du ◽  
Amanda D. Roe ◽  
Felix A.H. Sperling
Keyword(s):  
Mitochondrial Dna ◽  
Dna Sequences ◽  
Morphological Characters ◽  
Species Group ◽  
Morphological Data ◽  
Combined Analysis ◽  
Mitochondrial Coi ◽  
The North ◽  
Phylogenetic Framework ◽  
Species Groups

AbstractConeworms of the genus Dioryctria Zeller are important lepidopterous pests of conifer cones throughout the Holarctic region. Seventy-nine Dioryctria species are currently recognized and arranged into 11 species groups, but a globally unified classification of these species groups has not been attained. We surveyed 14 Dioryctria species belonging to 7 species groups recognized as being taxonomically problematic. Mitochondrial DNA sequences and morphological characters were used to resolve relationships among and within species groups and species. Sequences were obtained for 2.3 kb of the mitochondrial COI + COII genes and related to 52 morphological characters. Parsimony analyses of separate and combined data showed that (i) the five included Chinese species (D. abietella (Denis and Schiffermüller), D. rubella Hampson, D. nr. rubella, D. magnifica Munroe, and D. yiai Mutuura and Munroe) were distinct from the North American taxa, and their relationships were interspersed among Nearctic and European species; (ii) three of the four species groups represented by more than one species formed robust, well-supported clades (abietella group, sylvestrella group, and zimmermani group) for both mtDNA sequences and morphology; (iii) mtDNA and morphology gave conflicting interspecific and intergroup relationships for the auranticella, schuetzeella, ponderosae, and baumhoferi groups; (iv) all eight species for which more than one specimen was sampled were characterized by discrete clusters of mitochondrial DNA haplotypes, and mtDNA divergences among species in the same species group were generally less than those among species in different species groups; and (v) combining mtDNA data with morphological data increased support for most nodes in the phylogeny, with morphological characters providing support for species groups and mtDNA being essential for distinguishing species within species groups. This study demonstrates the value of a combined analysis of both mtDNA and morphological characters and establishes a phylogenetic framework for broader and more comprehensive studies of Dioryctria species.

Towards a phylogeny of Tanytarsus van der Wulp (Diptera: Chironomidae). Is morphology alone sufficient to reconstruct the genealogical relationship?

2003 ◽  
Vol 34 (2) ◽  
pp. 199-219 ◽  
Author(s):  
Torbjørn Ekrem
Keyword(s):  
Morphological Characters ◽  
Molecular Data ◽  
Species Group ◽  
Data Matrix ◽  
Data Set ◽  
Chironomid Species ◽  
Genealogical Relationship ◽  
Species Groups ◽  
One New Species ◽  
Male Pupa

AbstractA phylogenetic analysis of species potentially belonging to the Tanytarsus eminulus, gregarius, mendax and lugens species groups is performed using morphological characters from the adult male, pupa and larva. The results show that morphological characters do not support the postulated monophyly of the eminulus, gregarius, lugens and mendax group combined in unweighted parsimony analyses, and that a constraint based on unique synapomorphies and evidence from molecular data have to be used in order to produce cladograms with reasonable topologies. Four reasons for this are discussed: Few taxa, few characters, choice of secondary outgroup taxa and a high amount of homoplasy in the data set. A hierarchial analysis procedure is used to avoid the numerous question marks in the complete data matrix. In the preferred tree, the traditional species groups within Tanytarsus are kept, and one new species group, the mcmillani group, comprising only old Gondwanan species is erected. The results are compared to other recent studies on chironomid species relationships, and comments are given to the zoogeographical patterns of the species in the eminulus, gregarius, lugens, mcmillani and mendax species groups.

scholarly journals Phylogenetic Analysis of Mitochondrial Genes of Malaysian Tupaia Reveals Composite Species in Tupaia Glis

2021 ◽  
Vol 3 (1) ◽  
pp. 197-203
Author(s):  
Jayaraj Vijaya Kumaran ◽  
Ahmad Sofiman Othman ◽  
Shahrul-Anuar Mohd Sah ◽  
Seri Intan Mokhtar
Keyword(s):  
Phylogenetic Analysis ◽  
Mitochondrial Dna ◽  
Dna Sequences ◽  
Phylogenetic Trees ◽  
Mitochondrial Genes ◽  
Peninsular Malaysia ◽  
Universal Primers ◽  
Cyt B ◽  
Southern Thailand ◽  
Tupaia Glis

Recent morphometric analysis on T. glis in Peninsular Malaysia indicates that there were more than one morphotypes in this species. Thus this study attempts to examine this phenomenon using mitochondrial DNA sequences of Cyt b and CO1 genes. A total of 74 DNA sequences for both genes were generated using available universal primers. Samples from Southern Thailand were found to be misidentified as T. glis when in fact these samples clustered with T. belangeri while one T. tana from Borneo was miss-identified as T. minor. The phylogenetic trees showed that there are at least one confirmed morphotype of Tupaia (new Tupaia sp.) that have yet to be described. The results also showed that the separation of T. glis morphotype 1 and 11 were visible in the combined genes tree, congruent with the morphometric phylogeny but had poor phylogenetic support.

scholarly journals Phylogeny, morphology and the role of hybridization as driving force of evolution in grass tribes Aveneae and Poeae (Poaceae)

2019 ◽  
Author(s):  
Natalia Tkach ◽  
Julia Schneider ◽  
Elke Döring ◽  
Alexandra Wölk ◽  
Anne Hochbach ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Trees ◽  
Morphological Evolution ◽  
Morphological Characters ◽  
Data Matrix ◽  
Hybrid Origin ◽  
Molecular Phylogenetic Analysis ◽  
Study Group ◽  
Ancestral State ◽  
Molecular Phylogenetic

ABSTRACTTo investigate the evolutionary diversification and morphological evolution of grass supertribe Poodae (subfam. Pooideae, Poaceae) we conducted a comprehensive molecular phylogenetic analysis including representatives from most of their accepted genera. We focused on generating a DNA sequence dataset of plastid matK gene–3’trnK exon and trnL– trnF regions and nuclear ribosomal ITS1–5.8S gene–ITS2 and ETS that was taxonomically overlapping as completely as possible (altogether 257 species). The idea was to infer whether phylogenetic trees or certain clades based on plastid and nuclear DNA data correspond with each other or discord, revealing signatures of past hybridization. The datasets were analysed using maximum parsimony, maximum likelihood and Bayesian approaches. Instances of severe conflicts between the phylogenetic trees derived from both datasets, some of which have been noted earlier, unambiguously point to hybrid origin of several lineages (subtribes, groups of genera, sometimes genera) such as Phalaridinae, Scolochloinae, Sesleriinae, Torreyochloinae; Arctopoa, Castellia, Graphephorum, Hyalopodium, Lagurus, Macrobriza, Puccinellia plus Sclerochloa, Sesleria, Tricholemma, American Trisetum, etc. and presumably Airinae, Holcinae and Phleinae. ‘Calamagrostis’ flavens appears to be an intergeneric hybrid between Agrostis and Calamagrostis. Most frequently there is good agreement of other regions of the trees, apart from intrinsic different phylogenetic resolution of the respective DNA markers. To explore the to date rather unclear morphological evolution of our study group a data matrix encompassing finally 188 characters was analysed for ancestral state reconstructions (ASR) using the tree from the combined molecular dataset as presumably best approximation to the species phylogeny. For 74 characters ASRs were feasible and yielded partly surprising results for the study group as a whole but also for some of their subdivisions. Considering taxonomy and classification it became evident, that many morphological characters show a very high degree of homoplasy and are seemingly able to change within comparatively short timespans in the evolution of our grasses. Most of the taxonomic units distinguished within our study group, e.g. as subtribes, are defined less by consistent morphological characters or character combinations and should be rather understood as clades revealed by molecular phylogenetic analysis. One reason for this extreme homoplasy concerning traditionally highly rated characters of inflorescences or spikelets and their components might be that they have little to do with pollination (always wind) or adaptation to pollinators as in other angiosperms but rather with dispersal and diaspores. Easily changing structure of spikelet disarticulation, of glume, lemma or awn characters might be advantageous in the rapid adaptation to different habitats and micro-habitats, which was evidently most successfully accomplished by these grasses. A partly revised classification of Poodae is presented, including a re-instatement of tribes Aveneae and Poeae s.str. Following a comparatively narrow delineation of preferably monophyletic subtribes, Antinoriinae, Avenulinae, Brizochloinae, Helictochloinae, Hypseochloinae are described as new. New genera are Arctohyalopoa and Hyalopodium. New combinations are Arctohyalopoa lanatiflora, A. lanatiflora subsp. ivanoviae, A. lanatiflora subsp. momica, Colpodium biebersteinianum, C. kochii, C. trichopodum, C. verticillatum, Deschampsia micrathera, Dupontia fulva, Festuca masafuerana, Hyalopodium araraticum, Paracolpodium baltistanicum, Parapholis cylindrica, P. ×pauneroi. Festuca masatierrae is a new name.Supporting Information may be found online in the Supporting Information section at the end of the article.

scholarly journals Simulium (Trichodagmia) (Diptera, Simuliidae) phylogeny revisited: the Neotropical and Afrotropical connection

2021 ◽  
Vol 773 ◽  
Author(s):  
Óscar S. Molina ◽  
Leonardo H. Gil-Azevedo
Keyword(s):  
Phylogenetic Analysis ◽  
Classification System ◽  
Species Group ◽  
Data Matrix ◽  
New Classification ◽  
Neotropical Species ◽  
New Subgenus ◽  
History Of ◽  
Phylogenetic Framework ◽  
Species Groups

Simulium (Trichodagmia) Enderlein, 1934 has an unstable classification system. The broader concept of the subgenus includes five species-groups resulting from an extensive history of synonymisations, often outside of a phylogenetic framework. This concept also ignores relationship hypotheses with the Afrotropical subgenera S. (Anasolen) Enderlein, 1930, S. (Freemanellum) Crosskey, 1969, S. (Xenosimulium) Crosskey, 1969, and the Oviedoi species-group, with several Neotropical species of S. (Trichodagmia). We performed a morphological phylogenetic analysis to test the monophyly of S. (Trichodagmia), its species-groups, and their relationship with the above-mentioned subgenera and Oviedoi species-group. We analysed a data matrix with 69 terminal taxa and 62 characters under parsimony implied weights, with a range of concavities (k1–100), finding three categories of k. Our analysis concludes that S. (Trichodagmia) is not monophyletic, since Oviedoi and the Afrotropical subgenera group with its species-groups Tarsatum and Orbitale. Therefore, we propose a new classification for S. (Trichodagmia) by restricting it to the Orbitale species-group, revalidating S. (Hearlea) Vargas et al., 1946, S. (Hemicnetha) Enderlein, 1934, S. (Obuchovia) Rubtsov, 1947 and S. (Shewellomyia) Peterson, 1975, synonymysing S. (Xenosimulium) with S. (Anasolen), and erecting a new subgenus, S. (Disculter) subgen. nov. for Oviedoi. The geographical distribution of the groups involved is discussed.

scholarly journals Phylogenetic analysis and systematic position of two new species of the ant genus Crematogaster (Hymenoptera, Formicidae) from Southeast Asia

2017 ◽  
Author(s):  
Shingo Hosoishi ◽  
Kazuo Ogata
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Divergence Time ◽  
Morphological Characters ◽  
Systematic Position ◽  
Species Group ◽  
Morphological Evidence ◽  
Divergence Time Estimates ◽  
Close Relationship ◽  
Molecular Phylogenetic

Two distinct new species of the ant genus Crematogaster, C. khmerensis sp. nov. and C. pfeifferi sp. nov., are described from Cambodia and Malaysia, respectively. The two species are unique among Asian Crematogaster in that they have vertically directed propodeal spines, but their systematic positions have not been determined based on morphological characters alone. Molecular phylogenetic analysis of 89 Crematogaster taxon matrices previously published plus C. khmerensis sp. nov., using nuclear genes, reveals that C. khmerensis sp. nov. is nested within the Australo-Asian Crematogaster clade. Morphological assignment of the developed pronotal shoulders implies a close relationship between C. khmerensis sp. nov. and the C. tetracantha-group. Based on molecular and morphological evidence, we erect a new species group, C. khmerensis-group, to contain C. khmerensis sp. nov. and C. pfeifferi sp. nov. Divergence time estimates using MCMCTree shows that the root node of the C. khmerensis sp. nov. terminal is estimated to be of middle Miocene age at 15 million years old. The position of the C. khmerensis-group well supports the Oriental- to Australian-region dispersal history that has been proposed for the Australo-Asian Crematogaster clade.

scholarly journals Bringing order to a complex system: phenotypic and genotypic evidence contribute to the taxonomy of Tityus (Scorpiones, Buthidae) and support the description of a new species

ZooKeys ◽  
2021 ◽  
Vol 1075 ◽  
pp. 33-75
Author(s):  
Jairo A. Moreno-González ◽  
Ricardo Pinto-da-Rocha ◽  
Jonas E. Gallão
Keyword(s):  
Complex System ◽  
Phylogenetic Analysis ◽  
New Species ◽  
Species Group ◽  
Phenotypic Characters ◽  
Central Brazil ◽  
Coloration Pattern ◽  
Molecular Phylogenetic ◽  
Species Groups ◽  
A New Species

We present a molecular phylogenetic analysis including a survey for overlooked phenotypic characters. Based on both analysis and characters a new cave-dwelling species is described: Tityus (Tityus) spelaeussp. nov. from the Russão II cave, Posse, state of Goiás, Central Brazil. Characters such as the glandular regions of the female pectinal basal piece and basal middle lamellae of pectines, and the distribution of the ventral setae of telotarsi I–IV proved to be useful to constructing the taxonomy of species and species groups of Tityus. The new species is a member of the Tityus trivittatus species-group of Tityus (Tityus) and can be readily recognized by the immaculate coloration pattern and the more developed glandular region on the female pectinal basal piece. In addition, we provide a discussion of the phylogenetic relationships observed within Tityus, on the relevance of the new phenotypic characters to the modern taxonomy of the genus Tityus, and to the records of Brazilian cave scorpions.

scholarly journals New Insight into the Systematics of European Lepidocyrtus (Collembola: Entomobryidae) Using Molecular and Morphological Data

Insects ◽  
2020 ◽  
Vol 11 (5) ◽  
pp. 302
Author(s):  
Daniel Winkler ◽  
Eduardo Mateos ◽  
György Traser ◽  
Ferenc Lakatos ◽  
Viktória Tóth
Keyword(s):  
Phylogenetic Analysis ◽  
Molecular Analysis ◽  
Morphological Characters ◽  
Morphological Data ◽  
Gene Sequences ◽  
European Species ◽  
Individual Gene ◽  
Representative Species ◽  
Species Groups ◽  
Insight Into

The Collembolan genus Lepidocyrtus is subdivided into up to eight subgenera, of which only Lepidocyrtus s.str. (Bourlet, 1839) and Lanocyrtus (Yoshii & Suhardjono, 1989) are represented by European species. The discovery of unique characters in the European species Lepidocyrtus tomosvaryi (rounded dental tubercle) and L. peisonis (lateral tuft of long filiform chaetae in abdomen III) has only described so far for species of the subgenera Setogaster (Salmon, 1951) and Cinctocyrtus (Yoshii & Suhardjono, 1989) and has raised the need to perform a molecular analysis by involving other representative species of the genus. For this study, phylogenetic analysis of 15 Lepidocyrtus species occurring in the Carpathian Basin were carried out. The analyses, which was based on both concatenated datasets of COII and EF1-α sequences and individual gene sequences, clearly placed L. tomosvaryi within the subgenus Lanocyrtus and L. peisonis within Lepidocyrtus s.srt. European species groups defined on the basis of morphological characters were only partly confirmed by the concatenated and COII analyses because of the splitting of the pallidus–serbicus-group, whereas EF1- α sequences weakly supported this group.

Phylogenetic analysis of Lachesilla Westwood (Psocodea: Psocomorpha: Lachesillidae) and relationships of sister genera of the subfamily Lachesillinae

Zootaxa ◽  
2019 ◽  
Vol 4691 (2) ◽  
pp. 101-124
Author(s):  
OSCAR FERNANDO SAENZ MANCHOLA ◽  
ALFONSO NERI GARCÍA ALDRETE ◽  
RANULFO GONZÁLEZ OBANDO
Keyword(s):  
Phylogenetic Analysis ◽  
Optimality Criterion ◽  
Sister Group ◽  
Morphological Characters ◽  
Species Group ◽  
Undescribed Species ◽  
Clade B ◽  
Outgroup Species ◽  
Branch Support ◽  
Species Groups

Lachesilla is the most species-rich psocid genus, with 341 species grouped into 19 species groups (with at least 100 undescribed species), plus an additional undescribed species group. We present the first phylogenetic analysis of Lachesilla and a discussion on the relationships of sister genera of the subfamily Lachesillinae. We codified a matrix of 60 morphological characters (16 multistate and 44 binary) formed by 44 terminals: 37 ingroup species and seven outgroup species. A phylogenetic analysis was performed using Maximum Parsimony (MP) as optimality criterion, under equal weights and implied weights approaches. Monophyly of Lachesilla is not recovered, showing a polyphyletic genus divided in two major clades: clade A, composed of the pedicularia species group + Nadleria, and clade B, including the remaining species groups. The implied weights analysis produced a hypothesis with Hemicaecilius as sister group of clade B, nesting seven subclades mainly with low branch support values (symmetric resampling and bootstrap). These results suggest that all species groups, included in this analysis, can be considered monophyletic clades based on several synapomorphies, despite the andra species group was split up showing that L. punctata + L. dentata cluster together with high branch support values, but L. tehuautlensis and L. falcicula were recovered in different subclades. 

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