Theoretical and experimental analysis of the forced LacI-AraC oscillator with a minimal gene regulatory model

Guillermo Rodrigo; Boris Kirov; Shensi Shen; Alfonso Jaramillo

doi:10.1063/1.4809786

Theoretical and experimental analysis of the forced LacI-AraC oscillator with a minimal gene regulatory model

Chaos An Interdisciplinary Journal of Nonlinear Science ◽

10.1063/1.4809786 ◽

2013 ◽

Vol 23 (2) ◽

pp. 025109 ◽

Cited By ~ 6

Author(s):

Guillermo Rodrigo ◽

Boris Kirov ◽

Shensi Shen ◽

Alfonso Jaramillo

Keyword(s):

Experimental Analysis ◽

Gene Regulatory ◽

Regulatory Model

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PID control at bifurcation in a single-gene regulatory model with delays

IECON 2017 - 43rd Annual Conference of the IEEE Industrial Electronics Society ◽

10.1109/iecon.2017.8216891 ◽

2017 ◽

Cited By ~ 1

Author(s):

Binbin Tao ◽

Min Xiao

Keyword(s):

Pid Control ◽

Single Gene ◽

Gene Regulatory ◽

Regulatory Model

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IGAP-integrative genome analysis pipeline reveals new gene regulatory model associated with nonspecific TF-DNA binding affinity

Computational and Structural Biotechnology Journal ◽

10.1016/j.csbj.2020.05.024 ◽

2020 ◽

Vol 18 ◽

pp. 1270-1286

Author(s):

Alireza Sahaf Naeini ◽

Amna Farooq ◽

Magnar Bjørås ◽

Junbai Wang

Keyword(s):

Dna Binding ◽

Binding Affinity ◽

Genome Analysis ◽

Analysis Pipeline ◽

New Gene ◽

Dna Binding Affinity ◽

Gene Regulatory ◽

Regulatory Model

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Time delay-accelerated transition of gene switch and -enhanced stochastic resonance in a bistable gene regulatory model

2011 IEEE International Conference on Systems Biology (ISB) ◽

10.1109/isb.2011.6033129 ◽

2011 ◽

Author(s):

Canjun Wang ◽

Ming Yi ◽

Keli Yang

Keyword(s):

Time Delay ◽

Stochastic Resonance ◽

Gene Regulatory ◽

Regulatory Model ◽

Gene Switch

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A Gene Regulatory Model for the Development of Primitive Nervous Systems

Advances in Neuro-Information Processing - Lecture Notes in Computer Science ◽

10.1007/978-3-642-02490-0_6 ◽

2009 ◽

pp. 48-55 ◽

Cited By ~ 7

Author(s):

Yaochu Jin ◽

Lisa Schramm ◽

Bernhard Sendhoff

Keyword(s):

Nervous Systems ◽

Gene Regulatory ◽

Primitive Nervous Systems ◽

Regulatory Model

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Stability and bifurcation analysis of a fractional-order single-gene regulatory model with delays under a novel PDα control law

International Journal of Biomathematics ◽

10.1142/s1793524520500163 ◽

2020 ◽

Vol 13 (03) ◽

pp. 2050016 ◽

Cited By ~ 1

Author(s):

Qiu Lu ◽

Min Xiao ◽

Zunshui Cheng ◽

Yurong Song ◽

Chengdai Huang ◽

...

Keyword(s):

Fractional Order ◽

Genetic Model ◽

Single Gene ◽

Control Law ◽

Dynamical Behaviors ◽

Control Gain ◽

Fractional Differential ◽

Gene Regulatory ◽

The Stability ◽

Regulatory Model

In this paper, we propose a novel fractional-order proportional-derivative (PD) strategy to achieve the control of bifurcation of a fractional-order gene regulatory model with delays. The stability theory of fractional differential equations proved that with delays, some explicit conditions for the local asymptotical stability and Hopf bifurcation are given for the controlled fractional-order genetic model. It is demonstrated that the fractional-order gene regulatory model becomes controllable by adjusting the control gain parameters. In addition, the effect of fractional-order parameter on the dynamical behaviors is shown. Finally, numerical simulations are carried out to testify the validity of the main results and the availability of the fractional-order PD controller.

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Stability and Bifurcation Analysis in A Single-Gene Regulatory Model with Delays via Dual State Feedback control

2019 Chinese Control Conference (CCC) ◽

10.23919/chicc.2019.8865544 ◽

2019 ◽

Author(s):

Qiu Lu ◽

Huaifei Wang ◽

Min Xiao ◽

Binbin Tao ◽

Guoping Jiang

Keyword(s):

Feedback Control ◽

Bifurcation Analysis ◽

State Feedback ◽

Single Gene ◽

State Feedback Control ◽

Stability And Bifurcation ◽

Stability And Bifurcation Analysis ◽

Gene Regulatory ◽

Regulatory Model

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THRESHOLD LOGIC GENE REGULATORY MODEL - Prediction of Dorsal-ventral Patterning and Hardware-based Simulation of Drosophila

Proceedings of the First International Conference on Biomedical Electronics and Devices ◽

10.5220/0001054302120219 ◽

2008 ◽

Keyword(s):

Model Prediction ◽

Threshold Logic ◽

Gene Regulatory ◽

Regulatory Model

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Inference of gene regulatory model by genetic algorithms

Proceedings of the 2001 Congress on Evolutionary Computation (IEEE Cat. No.01TH8546) ◽

10.1109/cec.2001.934461 ◽

2002 ◽

Cited By ~ 32

Author(s):

S. Ando ◽

H. Iba

Keyword(s):

Genetic Algorithms ◽

Gene Regulatory ◽

Regulatory Model

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Genomic imprinting—an epigenetic gene-regulatory model

Current Opinion in Genetics & Development ◽

10.1016/j.gde.2010.01.009 ◽

2010 ◽

Vol 20 (2) ◽

pp. 164-170 ◽

Cited By ~ 44

Author(s):

Martha V Koerner ◽

Denise P Barlow

Keyword(s):

Genomic Imprinting ◽

Gene Regulatory ◽

Regulatory Model

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A Boolean gene regulatory model of heterosis and speciation

BMC Evolutionary Biology ◽

10.1186/s12862-015-0298-0 ◽

2015 ◽

Vol 15 (1) ◽

pp. 24 ◽

Cited By ~ 5

Author(s):

Peter Emmrich ◽

Hannah Roberts ◽

Vera Pancaldi

Keyword(s):

Gene Regulatory ◽

Regulatory Model

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