Rapid DNA hybridization based on ac field focusing of magnetically labeled target DNA

2005 ◽  
Vol 87 (1) ◽  
pp. 013901 ◽  
Author(s):  
H. A. Ferreira ◽  
N. Feliciano ◽  
D. L. Graham ◽  
L. A. Clarke ◽  
M. D. Amaral ◽  
...  
2014 ◽  
Vol 2014 ◽  
pp. 1-5 ◽  
Author(s):  
Samsulida Abdul Rahman ◽  
Rafidah Saadun ◽  
Nur Ellina Azmi ◽  
Nurhayati Ariffin ◽  
Jaafar Abdullah ◽  
...  

A label-free optical detection method based on PNA/DNA hybridization using unmodified gold nanoparticles (AuNPs) for dengue virus detection has been successfully developed. In this study, no immobilization method is involved and the hybridization of PNA/DNA occurs directly in solution. Unmodified AuNPs undergo immediate aggregation in the presence of neutral charge peptide nucleic acid (PNA) due to the coating of PNA on AuNPs surface. However, in the presence of complementary targets DNA, the hybridization of PNA probe with target DNA forms negatively charged complexes due to the negatively charged phosphate backbone of the target DNA. The negatively charged complexes adsorbed onto the AuNPs surface ensure sufficient charge repulsion, need for AuNPs dispersion, and stability in solution. The detection procedure is a naked eye method based on immediate color changes and also through UV-vis adsorption spectra. The selectivity of the proposed method was studied successfully by single base mismatch and noncomplementary target DNA.


2016 ◽  
Vol 2016 ◽  
pp. 1-7 ◽  
Author(s):  
Md. Biplob Hossain ◽  
Md. Masud Rana

This paper demonstrates a numerical modeling of surface plasmon resonance (SPR) biosensor for detecting DNA hybridization by recording the resonance frequency characteristics (RFC). The proposed sensor is designed based on graphene material as biomolecular recognition elements (BRE) and the sharp SPR curve of gold (Au). Numerical analysis shows that the variation of RFC for mismatched DNA strands is quiet negligible whereas that for complementary DNA strands is considerably countable. Here, graphene is used to perform faster immobilization between target DNA and probe DNA. The usage of graphene also changes the RFC that ensure hybridization of DNA event by utilizing its optochemical property. In addition, proposed sensor successfully distinguishes between hybridization and single-nucleotide polymorphisms (SNP) by observing the variation level of RFC and maximum transmittance. Therefore, the proposed frequency readout based SPR sensor could potentially open a new window of detection for biomolecular interactions. We also highlight the advantage of using graphene sublayer by performing the sensitivity analysis. Sandwiching of each graphene sublayer enhances 95% sensitivity comparing with conventional SPR sensor.


2003 ◽  
Vol 15 (5-6) ◽  
pp. 431-440 ◽  
Author(s):  
Miroslav Fojta ◽  
Ludek Havran ◽  
Sabina Billova ◽  
Pavel Kostecka ◽  
Michal Masarik ◽  
...  

The Analyst ◽  
2016 ◽  
Vol 141 (20) ◽  
pp. 5815-5821 ◽  
Author(s):  
Klaudia Kaniewska ◽  
Agata Kowalczyk ◽  
Marcin Karbarz ◽  
Anna M. Nowicka

A simple biosensing platform which involves the application of thermoresponsive hydrogels for the biochemical recognition of target DNA is presented.


The Analyst ◽  
2014 ◽  
Vol 139 (19) ◽  
pp. 4964-4973 ◽  
Author(s):  
Leonor Soares ◽  
Andrea Csáki ◽  
Jacqueline Jatschka ◽  
Wolfgang Fritzsche ◽  
Orfeu Flores ◽  
...  

Hybridization of target DNA to AuNT-probes causes LSPR to red-shift.


2021 ◽  
Author(s):  
Esmaeel Alipour ◽  
Sheida Norouzi ◽  
Shokoufe Moradi

Electrochemical DNA biosensor is designed for detection of specific target DNA after hybridization with complementary probe DNA immobilized onto glassy carbon electrode surface. Quercetin was successfully used as a new...


1991 ◽  
Vol 22 (2) ◽  
pp. 79-84 ◽  
Author(s):  
Lawrence R. Zeph ◽  
Xiaoyan Lin ◽  
Guenther Stotzky

Sensors ◽  
2021 ◽  
Vol 21 (13) ◽  
pp. 4439
Author(s):  
Dalal A. Aloraini ◽  
Aljawhara H. Almuqrin ◽  
Amal Alanazi ◽  
Qura Tul Ain ◽  
Abdullah N. Alodhayb

Coronavirus (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has been identified as a deadly pandemic. The genomic analysis of SARS-CoV-2 is performed using a reverse transcription-polymerase chain reaction (RT-PCR) technique for identifying viral ribonucleic acid (RNA) in infected patients. However, the RT-PCR diagnostic technique is manually laborious and expensive; therefore, it is not readily accessible in every laboratory. Methodological simplification is crucial to combat the ongoing pandemic by introducing quick, efficient, and affordable diagnostic methods. Here, we report how microcantilever sensors offer promising opportunities for rapid COVID-19 detection. Our first attempt was to capture the single-stranded complementary DNA of SARS-CoV-2 through DNA hybridization. Therefore, the microcantilever surface was immobilized with an oligonucleotide probe and detected using complementary target DNA hybridization by a shift in microcantilever resonance frequency. Our results show that microcantilever sensors can discriminate between complementary and noncomplementary target DNA on a micro to nanoscale. Additionally, the microcantilever sensors’ aptitude toward partial complementary DNA determines their potential to identify new variants of coronavirus. Therefore, microcantilever sensing could be a vital tool in the effort to extinguish the spreading COVID-19 pandemic.


Sensor Review ◽  
2016 ◽  
Vol 36 (4) ◽  
pp. 368-376
Author(s):  
Mehdi Habibi ◽  
Maryam Fanaei

Purpose The purpose of this paper is to present a DNA hybridization detection sensor. An inexpensive fabrication procedure was used so that the sensors can be disposed economically after the measurement is completed. Design/methodology/approach Field effect transistor (FET) devices are used in the proposed structure. The FET device acts as a charge detection element and produces an amplified output current based on surface charge variations. As amplification is performed directly at the sensor frontend, noise sources have less effect on the detected signal, and thus, acceptably low DNA concentrations can be detected with simple external electronics. ZnO nano layers are used as the FET active semiconductor channel. Furthermore, a photobiasing approach is used to adjust the operating point of the proposed FET without the need for an additional gate terminal. Findings The proposed sensor is evaluated by applying matched and unmatched target DNA fragments on the fabricated sensors with capture probes assembled either directly on the ZnO surface or on a nano-platinum linker layer. It is observed that the presented approach can successfully detect DNA hybridization at the nano mole range with no need for complex laboratory measurement devices. Originality/value The presented photobiasing approach is effective in the adjustment of the sensor sensitivity and decreases the fabrication complexity of the achieved sensor compared with previous works.


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