Molecular dynamics simulation of NMR relaxation rates and slow dynamics in lipid bilayers

Erik Lindahl; Olle Edholm

doi:10.1063/1.1389469

Molecular dynamics simulation of NMR relaxation rates and slow dynamics in lipid bilayers

The Journal of Chemical Physics ◽

10.1063/1.1389469 ◽

2001 ◽

Vol 115 (10) ◽

pp. 4938-4950 ◽

Cited By ~ 87

Author(s):

Erik Lindahl ◽

Olle Edholm

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Lipid Bilayers ◽

Nmr Relaxation ◽

Dynamics Simulation ◽

Relaxation Rates ◽

Slow Dynamics

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Molecular Dynamics Simulation of Diacylglycerols in Phosphatidycholine Lipid Bilayers

Biophysical Journal ◽

10.1016/j.bpj.2012.11.491 ◽

2013 ◽

Vol 104 (2) ◽

pp. 81a-82a

Author(s):

Mohammad S. Alwarawrah ◽

Juyang Huang

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Lipid Bilayers ◽

Dynamics Simulation

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Movement of Small Molecules in Lipid Bilayers: Molecular Dynamics Simulation Studies

Biological Membranes ◽

10.1007/978-1-4684-8580-6_8 ◽

1996 ◽

pp. 255-279 ◽

Cited By ~ 7

Author(s):

Terry R. Stouch ◽

Donna Bassolino

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Small Molecules ◽

Lipid Bilayers ◽

Dynamics Simulation ◽

Simulation Studies

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A comparison of15N NMR relaxation measurements with a molecular dynamics simulation: Backbone dynamics of the glucocorticoid receptor DNA-binding domain

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.340170406 ◽

1993 ◽

Vol 17 (4) ◽

pp. 375-390 ◽

Cited By ~ 40

Author(s):

Mats A. L. Eriksson ◽

Helena Berglund ◽

Torleif Härd ◽

Lennart Nilsson

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dna Binding ◽

Glucocorticoid Receptor ◽

Nmr Relaxation ◽

Binding Domain ◽

Dynamics Simulation ◽

Backbone Dynamics ◽

Dna Binding Domain ◽

Relaxation Measurements

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Effect of the aminoacid composition of model α-helical peptides on the physical properties of lipid bilayers and peptide conformation: a molecular dynamics simulation

Journal of Molecular Modeling ◽

10.1007/s00894-012-1550-9 ◽

2012 ◽

Vol 19 (11) ◽

pp. 4723-4730 ◽

Cited By ~ 2

Author(s):

Milan Melicherčík ◽

Alžbeta Holúbeková ◽

Tibor Hianik ◽

Ján Urban

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Physical Properties ◽

Lipid Bilayers ◽

Peptide Conformation ◽

Dynamics Simulation ◽

Helical Peptides

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Solution Structure of a Type 1 H Antigen Trisaccharide at a Micellar Surface: NMR Relaxation and Molecular Dynamics Simulation Studies

The Journal of Physical Chemistry B ◽

10.1021/jp0136462 ◽

2002 ◽

Vol 106 (20) ◽

pp. 5275-5280 ◽

Cited By ~ 9

Author(s):

Kristina Lycknert ◽

Torgny Rundlöf ◽

Göran Widmalm

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Solution Structure ◽

Nmr Relaxation ◽

Dynamics Simulation ◽

Simulation Studies

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Clathrate formation and dissociation in vapor/water/ice/hydrate systems in SBA-15, sol–gel and CPG porous media, as probed by NMR relaxation, novel protocol NMR cryoporometry, neutron scattering and ab initio quantum–mechanical molecular dynamics simulation

Magnetic Resonance Imaging ◽

10.1016/j.mri.2006.11.022 ◽

2007 ◽

Vol 25 (4) ◽

pp. 533-536 ◽

Cited By ~ 23

Author(s):

J. Beau W. Webber ◽

Ross Anderson ◽

John H. Strange ◽

Bahman Tohidi

Keyword(s):

Molecular Dynamics ◽

Porous Media ◽

Molecular Dynamics Simulation ◽

Sol Gel ◽

Nmr Relaxation ◽

Dynamics Simulation ◽

Quantum Mechanical ◽

Clathrate Formation ◽

Water Ice ◽

Nmr Cryoporometry

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Phase-transition properties of glycerol-monopalmitate lipid bilayers investigated by molecular dynamics simulation: influence of the system size and force-field parameters

Molecular Simulation ◽

10.1080/08927022.2012.755526 ◽

2013 ◽

Vol 39 (7) ◽

pp. 563-583 ◽

Cited By ~ 9

Author(s):

Monika Laner ◽

Bruno A.C. Horta ◽

Philippe H. Hünenberger

Keyword(s):

Phase Transition ◽

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Force Field ◽

Lipid Bilayers ◽

System Size ◽

Dynamics Simulation ◽

Force Field Parameters

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Molecular dynamics simulation of hydrogen isotope-terminated silicon(111) and (110) surfaces: calculation of vibrational energy relaxation rates of hydrogen isotope stretching modes

Chemical Physics Letters ◽

10.1016/s0009-2614(00)00012-9 ◽

2000 ◽

Vol 318 (1-3) ◽

pp. 7-14 ◽

Cited By ~ 6

Author(s):

Ying-Chieh Sun ◽

Hsiu-Feng Lu ◽

Ming-Shun Ho

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Hydrogen Isotope ◽

Vibrational Energy ◽

Energy Relaxation ◽

Dynamics Simulation ◽

Relaxation Rates ◽

Vibrational Energy Relaxation

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Mechanical properties of lipid bilayers from molecular dynamics simulation

Chemistry and Physics of Lipids ◽

10.1016/j.chemphyslip.2015.07.014 ◽

2015 ◽

Vol 192 ◽

pp. 60-74 ◽

Cited By ~ 123

Author(s):

Richard M. Venable ◽

Frank L.H. Brown ◽

Richard W. Pastor

Keyword(s):

Mechanical Properties ◽

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Lipid Bilayers ◽

Dynamics Simulation

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1P049 Slow dynamics of protein backbone in molecular dynamics simulation revealed by time-structure based independent component analysis(01B. Protein:Structure & Function,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s114_1 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S114

Author(s):

Sotaro Fuchigami

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Independent Component Analysis ◽

Component Analysis ◽

Independent Component ◽

Time Structure ◽

Dynamics Simulation ◽

Slow Dynamics ◽

Protein Backbone

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