A comparison of15N NMR relaxation measurements with a molecular dynamics simulation: Backbone dynamics of the glucocorticoid receptor DNA-binding domain

Mats A. L. Eriksson; Helena Berglund; Torleif Härd; Lennart Nilsson

doi:10.1002/prot.340170406

A comparison of15N NMR relaxation measurements with a molecular dynamics simulation: Backbone dynamics of the glucocorticoid receptor DNA-binding domain

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.340170406 ◽

1993 ◽

Vol 17 (4) ◽

pp. 375-390 ◽

Cited By ~ 40

Author(s):

Mats A. L. Eriksson ◽

Helena Berglund ◽

Torleif Härd ◽

Lennart Nilsson

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dna Binding ◽

Glucocorticoid Receptor ◽

Nmr Relaxation ◽

Binding Domain ◽

Dynamics Simulation ◽

Backbone Dynamics ◽

Dna Binding Domain ◽

Relaxation Measurements

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Molecular Dynamics Simulation in Solvent of the Bacteriophage 434 cI Repressor Protein DNA Binding Domain Amino Acids (R1–69) in Complex with its Cognate Operator (OR1) DNA Sequence

Journal of Biomolecular Structure and Dynamics ◽

10.1080/07391102.1999.10508336 ◽

1999 ◽

Vol 17 (1) ◽

pp. 1-17 ◽

Cited By ~ 2

Author(s):

Lester F. Harris ◽

Michael R. Sullivan ◽

Pamela D. Popken-Harris

Keyword(s):

Molecular Dynamics ◽

Amino Acids ◽

Molecular Dynamics Simulation ◽

Dna Binding ◽

Dna Sequence ◽

Binding Domain ◽

Dynamics Simulation ◽

Dna Binding Domain ◽

Repressor Protein ◽

Bacteriophage 434

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Structural and dynamic differences of the estrogen receptor DNA-binding domain, binding as a dimer and as a monomer to DNA: molecular dynamics simulation studies

European Biophysics Journal ◽

10.1007/s002490050189 ◽

1999 ◽

Vol 28 (2) ◽

pp. 102-111 ◽

Cited By ~ 6

Author(s):

M. A. L. Eriksson ◽

L. Nilsson

Keyword(s):

Molecular Dynamics ◽

Estrogen Receptor ◽

Molecular Dynamics Simulation ◽

Dna Binding ◽

Binding Domain ◽

Dynamics Simulation ◽

Dna Binding Domain ◽

Simulation Studies

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Backbone dynamics of the glucocorticoid receptor DNA-binding domain

Biochemistry ◽

10.1021/bi00163a007 ◽

1992 ◽

Vol 31 (48) ◽

pp. 12001-12011 ◽

Cited By ~ 38

Author(s):

Helena Berglund ◽

Helena Kovacs ◽

Karin Dahlman-Wright ◽

Jan Aake Gustafsson ◽

Torleif Haerd

Keyword(s):

Dna Binding ◽

Glucocorticoid Receptor ◽

Binding Domain ◽

Backbone Dynamics ◽

Dna Binding Domain

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Internal dynamics of d(CGCAAATTTGCG) 2 : a comparison of NMR relaxation measurements with a molecular dynamics simulation

European Biophysics Journal ◽

10.1007/s002490050076 ◽

1997 ◽

Vol 26 (3) ◽

pp. 239-245 ◽

Cited By ~ 5

Author(s):

F. Gaudin ◽

D. Genest ◽

G. Lancelot

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Nmr Relaxation ◽

Dynamics Simulation ◽

Internal Dynamics ◽

Relaxation Measurements

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Conformational states of the glucocorticoid receptor DNA-binding domain from molecular dynamics simulations

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.10195 ◽

2002 ◽

Vol 49 (1) ◽

pp. 24-36 ◽

Cited By ~ 11

Author(s):

Johan Bredenberg ◽

Lennart Nilsson

Keyword(s):

Molecular Dynamics ◽

Dna Binding ◽

Glucocorticoid Receptor ◽

Molecular Dynamics Simulations ◽

Binding Domain ◽

Dna Binding Domain ◽

Conformational States ◽

Dynamics Simulations

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Self-Assembley of Dehaloperoxidase-Hemoglobin Probed by Backbone Dynamics using NMR Relaxation Experiments and Molecular Dynamics Simulation

Biophysical Journal ◽

10.1016/j.bpj.2013.11.2638 ◽

2014 ◽

Vol 106 (2) ◽

pp. 466a

Author(s):

Jing Zhao ◽

Mengjun Xue ◽

Hanna Gracz ◽

Stefan Franzen

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Nmr Relaxation ◽

Dynamics Simulation ◽

Backbone Dynamics ◽

Relaxation Experiments

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Molecular dynamics simulations of the glucocorticoid receptor DNA-binding domain in complex with DNA and free in solution

Biophysical Journal ◽

10.1016/s0006-3495(95)80203-1 ◽

1995 ◽

Vol 68 (2) ◽

pp. 402-426 ◽

Cited By ~ 40

Author(s):

M.A. Eriksson ◽

T. Härd ◽

L. Nilsson

Keyword(s):

Molecular Dynamics ◽

Dna Binding ◽

Glucocorticoid Receptor ◽

Molecular Dynamics Simulations ◽

Binding Domain ◽

Dna Binding Domain ◽

Dynamics Simulations

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Backbone dynamics of the glucocorticoid receptor DNA-binding domain. [Erratum to document cited in CA117(25):245708z]

Biochemistry ◽

10.1021/bi00065a042 ◽

1993 ◽

Vol 32 (14) ◽

pp. 3829-3829

Author(s):

Helena Berglund ◽

Helena Kovacs ◽

Karin Dahlman-Wright ◽

Jan Aake Gustafsson ◽

Torleif Haerd

Keyword(s):

Dna Binding ◽

Glucocorticoid Receptor ◽

Binding Domain ◽

Backbone Dynamics ◽

Dna Binding Domain

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Molecular dynamics simulations of the glucocorticoid receptor DNA-binding domain suggest a role of the lever-arm mobility in transcriptional output

PLoS ONE ◽

10.1371/journal.pone.0189588 ◽

2017 ◽

Vol 12 (12) ◽

pp. e0189588 ◽

Cited By ~ 1

Author(s):

Lautaro Damián Álvarez ◽

Diego Martín Presman ◽

Adalí Pecci

Keyword(s):

Molecular Dynamics ◽

Dna Binding ◽

Glucocorticoid Receptor ◽

Molecular Dynamics Simulations ◽

Binding Domain ◽

Dna Binding Domain ◽

Lever Arm ◽

Dynamics Simulations ◽

Transcriptional Output

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Analysis of 15N–1H NMR Relaxation in Proteins by a Combined Experimental and Molecular Dynamics Simulation Approach: Picosecond–Nanosecond Dynamics of the Rho GTPase Binding Domain of Plexin-B1 in the Dimeric State Indicates Allosteric Pathways

The Journal of Physical Chemistry B ◽

10.1021/jp310142f ◽

2012 ◽

Vol 117 (1) ◽

pp. 174-184 ◽

Cited By ~ 15

Author(s):

Mirco Zerbetto ◽

Ross Anderson ◽

Sabine Bouguet-Bonnet ◽

Mariano Rech ◽

Liqun Zhang ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

1H Nmr ◽

Rho Gtpase ◽

Nmr Relaxation ◽

Binding Domain ◽

Dynamics Simulation ◽

Simulation Approach ◽

Nanosecond Dynamics ◽

Gtpase Binding Domain

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