Ionic distribution around simple B-DNA models. III. The effect of ionic charge

2001 ◽  
Vol 114 (9) ◽  
pp. 4277-4284 ◽  
Author(s):  
José L. F. Abascal ◽  
Juan Carlos Gil Montoro
1998 ◽  
Vol 109 (14) ◽  
pp. 6200-6210 ◽  
Author(s):  
Juan Carlos Gil Montoro ◽  
José L. F. Abascal

1995 ◽  
Vol 103 (18) ◽  
pp. 8273-8284 ◽  
Author(s):  
J. C. Gil Montoro ◽  
J. L. F. Abascal

2020 ◽  
Vol 27 (9) ◽  
pp. 923-929
Author(s):  
Gaurav Pandey ◽  
Prem Prakash Das ◽  
Vibin Ramakrishnan

Background: RADA-4 (Ac-RADARADARADARADA-NH2) is the most extensively studied and marketed self-assembling peptide, forming hydrogel, used to create defined threedimensional microenvironments for cell culture applications. Objectives: In this work, we use various biophysical techniques to investigate the length dependency of RADA aggregation and assembly. Methods: We synthesized a series of RADA-N peptides, N ranging from 1 to 4, resulting in four peptides having 4, 8, 12, and 16 amino acids in their sequence. Through a combination of various biophysical methods including thioflavin T fluorescence assay, static right angle light scattering assay, Dynamic Light Scattering (DLS), electron microscopy, CD, and IR spectroscopy, we have examined the role of chain-length on the self-assembly of RADA peptide. Results: Our observations show that the aggregation of ionic, charge-complementary RADA motifcontaining peptides is length-dependent, with N less than 3 are not forming spontaneous selfassemblies. Conclusion: The six biophysical experiments discussed in this paper validate the significance of chain-length on the epitaxial growth of RADA peptide self-assembly.


2021 ◽  
Vol 125 (8) ◽  
pp. 4449-4457
Author(s):  
Jibin J. Samuel ◽  
Varun Kumar Karrothu ◽  
Ram Kumar Canjeevaram Balasubramanyam ◽  
Aiswarya Abhisek Mohapatra ◽  
Chandrasekhar Gangadharappa ◽  
...  

Antioxidants ◽  
2021 ◽  
Vol 10 (5) ◽  
pp. 774
Author(s):  
Hung-Ming Chang ◽  
Hsing-Chun Lin ◽  
Hsin-Lin Cheng ◽  
Chih-Kai Liao ◽  
To-Jung Tseng ◽  
...  

Early-life sleep deprivation (ESD) is a serious condition with severe cognitive sequelae. Considering hippocampus plays an essential role in cognitive regulation, the present study aims to determine whether melatonin, a neuroendocrine beard with significant anti-oxidative activity, would greatly depress the hippocampal oxidative stress, improves the molecular machinery, and consequently exerts the neuro-protective effects following ESD. Male weanling Wistar rats (postnatal day 21) were subjected to ESD for three weeks. During this period, the animals were administered normal saline or melatonin (10 mg/kg) via intraperitoneal injection between 09:00 and 09:30 daily. After three cycles of ESD, the animals were kept under normal sleep/wake cycle until they reached adulthood and were sacrificed. The results indicated that ESD causes long-term effects, such as impairment of ionic distribution, interruption of the expressions of neurotransmitters and receptors, decreases in the levels of several antioxidant enzymes, and impairment of several signaling pathways, which contribute to neuronal death in hippocampal regions. Melatonin administration during ESD prevented these effects. Quantitative evaluation of cells also revealed a higher number of neurons in the melatonin-treated animals when compared with the saline-treated animals. As the hippocampus is critical to cognitive activity, preserving or even improving the hippocampal molecular machinery by melatonin during ESD not only helps us to better understand the underlying mechanisms of ESD-induced neuronal dysfunction, but also the therapeutic use of melatonin to counteract ESD-induced neuronal deficiency.


1958 ◽  
Vol 41 (5) ◽  
pp. 959-988 ◽  
Author(s):  
W. P. Hurlbut

Azide (0.2 to 5.0 mM) and chloretone (2.0 to 15.0 mM) reversibly inhibited 20 to 90 per cent of the resting respiration of frog sciatic nerves, and caused a loss of potassium and a gain of sodium in this tissue. The changes in ionic contents that developed after 5 or 10 hours were roughly correlated with the degree of respiratory depression, but the time courses of these changes were different with the two reagents. In azide these changes appeared to begin immediately, while in chloretone, at concentrations between 3.0 and 5.0 mM, the ionic shifts developed after a delay of several hours. Fifteen millimolar chloretone produced immediate changes in ionic contents several times greater than those produced by anoxia. The changes in ionic distribution produced in 5 hours by anoxia, 5.0 mM azide, or 5.0 mM chloretone were at least partially reversible; those produced by 15.0 mM chloretone were irreversible. With the exception of 15.0 mM chloretone the ionic shifts produced by these reagents may be due primarily to the depression of the respiration, although there are indications that azide acts, in addition, by another pathway. Concentrations of azide or chloretone that depressed the resting rate of oxygen consumption more than 50 per cent produced a slow conduction block, while 15.0 mM chloretone blocked conduction within 15 minutes.


2003 ◽  
Vol 17 (16) ◽  
pp. 885-896 ◽  
Author(s):  
Su-Long Nyeo ◽  
I-Ching Yang

The phase transition of DNA molecules is studied in an exactly solvable formalism with the Morse and Deng–Fan potentials for the interstrand hydrogen bonds of nucleotide base pairs. It is shown that although the two potentials have different short-range behaviors, the thermodynamic quantities of the DNA system in these potentials enjoy the same scaling laws with the associated critical exponents, which are explicitly calculated. These exactly solvable DNA models are shown to exhibit a phase transition of the second order and the results of the analysis agree with previous studies.


1967 ◽  
Vol 9 (2) ◽  
pp. 159-177 ◽  
Author(s):  
A. Kruszewska ◽  
W. Gajewski

Mutants of the Y locus differed appreciably in their basic conversion frequencies (frequencies of conversion in one-point crosses) to wild type. The differences in the basic conversion frequencies in the opposite direction, i.e. from corresponding wild-type allele to mutant, were in general not pronounced. For some alleles frequencies of conversion in both directions were similar, but for the others they differed markedly. No evident correlation between the position of mutants on the map and their basic conversion frequencies was observed.In two-point crosses in repulsion, the great majority of recombinant octads were of conversion type. In these crosses symmetry or asymmetry of conversion depended mainly on similarity or differences in basic conversion frequencies of mutants crossed. In crosses between mutants from different clusters the recombination frequencies were near to the sums of their basic conversion frequencies. Such ‘mutant specificity’ makes it impossible to establish the linear order of mutants on the basis of recombination frequencies in two-point crosses.The results of two-point crosses in repulsion between mutants within clusters pointed to the influence of one allele on the frequency of conversion of another one. This ‘marker effect’ was also evident in some three-point crosses.The frequencies of simultaneous conversions in two-point crosses in coupling did not show negative correlation with the distances between the mutants involved.It seems that many of the data presented here are most easily explained by recently developed hybrid DNA models.


2009 ◽  
Vol 9 (5) ◽  
pp. 1579-1595 ◽  
Author(s):  
C. Galy-Lacaux ◽  
D. Laouali ◽  
L. Descroix ◽  
N. Gobron ◽  
C. Liousse

Abstract. Long-term precipitation chemistry have been recorded in the rural area of Banizoumbou (Niger), representative of a semi-arid savanna ecosystem. A total of 305 rainfall samples ~90% of the total annual rainfall) were collected from June 1994 to September 2005. From ionic chromatography, pH major inorganic and organic ions were detected. Rainwater chemistry is controlled by soil/dust emissions associated with terrigeneous elements represented by SO42−, Ca2+, Carbonates, K+ and Mg2+. It is found that calcium and carbonates represent ~40% of the total ionic charge. The second highest contribution is nitrogenous, with annual Volume Weighed Mean (VWM) for NO3− and NH4+ concentrations of 11.6 and 18.1 μeq.l−1, respectively. This is the signature of ammonia sources from animals and NOx emissions from savannas soil-particles rain-induced. The mean annual NH3 and NO2 air concentration are of 6 ppbv and 2.6 ppbv, respectively. The annual VWM precipitation concentration of sodium and chloride are both of 8.7 μeq.l−1 which reflects the marine signature of monsoonal and humid air masses. The median pH value is of 6.05. Acidity is neutralized by mineral dust, mainly carbonates, and/or dissolved gases such NH3. High level of organic acidity with 8μeq.l−1 and 5.2 μeq.l−1 of formate and acetate were also found. The analysis of monthly Black Carbon emissions and Fraction of Absorbed Photosynthetically Active Radiation (FAPAR) values show that both biogenic emission from vegetation and biomass burning could explain the rainfall organic acidity content. The interannual variability of the VWM concentrations around the mean (1994–2005) is between ±5% and ±30% and mainly due to variations of sources strength and rainfall spatio-temporal distribution. From 1994 to 2005, the total mean wet deposition flux in the Sahelian region is of 60.1 mmol.m−2.yr−1 ±25%. Finally, Banizoumbou measurements are compared to other long-term measurements of precipitation chemistry in the wet savanna of Lamto (Côte d'Ivoire) and in the forested zone of Zoétélé (Cameroon). The total chemical loading presents a maximum in the dry savanna and a minimum in the forest (from 143.7, 100.2 to 86.6 μeq.l−1), associated with the gradient of terrigeneous sources. The wet deposition fluxes present an opposite trend, with 60.0 mmol.m−2.yr−1 in Banizoumbou, 108.6 mmol.m−2.yr−1 in Lamto and 162.9 mmol.m−2.yr−1 in Zoétélé, controlled by rainfall gradient along the ecosystems transect.


Sign in / Sign up

Export Citation Format

Share Document