scholarly journals Kinetics of concomitant transfer and hydrolysis reactions catalysed by the exocellular dd-carboxypeptidase–transpeptidase of Streptomyces R61

1973 ◽  
Vol 135 (3) ◽  
pp. 483-492 ◽  
Author(s):  
J.-M. Frère ◽  
J.-M. Ghuysen ◽  
H. R. Perkins ◽  
M. Nieto
Keyword(s):  
Enzyme Activity ◽  
Binding Site ◽  
Water Content ◽  
Diaminopimelic Acid ◽  
Acceptor Molecule ◽  
Competitive Inhibitors ◽  
Hydrolysis Pathway ◽  
High Concentrations ◽  
Kinetics Of ◽  
Hydrolysis Of

When Ac2-l-Lys-d-Ala-d-Ala and either meso-diaminopimelic acid or Gly-l-Ala are exposed to the exocellular dd-carboxypeptidase–transpeptidase of Streptomyces R61, transpeptidation reactions yielding Ac2-l-Lys-d-Ala-(d)-meso- diaminopimelic acid and Ac2-l-Lys-d-Ala-Gly-l-Ala occur concomitantly with the hydrolysis of the tripeptide into Ac2-l-Lys-d-Ala. The proportion of the enzyme activity which can be channelled in the transpeptidation and the hydrolysis pathways depends upon the pH and the polarity of the environment. Transpeptidation is favoured both by increasing the pH and by decreasing the water content of the reaction mixtures. Kinetics suggest that the reactions proceed through an ordered mechanism in which the acceptor molecule (meso-diaminopimelic acid or Gly-l-Ala) binds first to the enzyme. Both acceptors behave as non-competitive inhibitors of the hydrolysis pathway. Transpeptidation is inhibited by high concentrations of Gly-l-Ala but not by high concentrations of meso-diaminopimelic acid. The occurrence on the enzyme of an additional inhibitory binding site for Gly-l-Ala is suggested.

Kinetics of the Inhibition of Plasmin in Acidified Human Plasma

1982 ◽  
Vol 48 (03) ◽  
pp. 257-259 ◽  
Author(s):  
H R Lijnen ◽  
M Maes ◽  
M Castel ◽  
M Samama ◽  
D Collen
Keyword(s):  
Human Plasma ◽  
Plasma Proteins ◽  
Competitive Inhibitor ◽  
Normal Plasma ◽  
Competitive Inhibitors ◽  
Rate Of Hydrolysis ◽  
Kinetics Of ◽  
Hydrolysis Of

SummaryAcid-treated human plasma is a competitive inhibitor of the hydrolysis of D-Val-Leu-Lys-Nan (S-2251) by plasmin. The rate of hydrolysis is decreased to 50% by 750 fold diluted acidified normal plasma and by 60 fold diluted acidified α2-antiplasmin depleted plasma (α2-antiplasmin concentration less than 2%). These findings suggest that α2-antiplasmin is a contributary but not the main competitive inhibitor of acidified plasma. This interpretation is supported by the finding that α2-antiplasmin depleted plasma reconstituted with purified α2-antiplasmin inhibits the hydrolysis of S-2251 by plasmin at a 125 fold dilution following acidification and by the finding that in a purified system acid inactivated α2-antiplasmin inhibits the hydrolysis of S-2251 by plasmin with a Ki of 25 nM. Thus, besides α2-antiplasmin, other plasma proteins which are at least in part eliminated by the removal of α2-antiplasmin from plasma by immunoadsorption appear to be competitive inhibitors for plasmin in acidified plasma. It is suggested that several competitive inhibitors for plasmin are present and/or generated in acidified plasma and that these inhibitors may at least in part be responsible for the variability in the results of measurements of plasminogen and/or plasmin in plasma following acidification.

Diagnostic Enzymology of a-L-Iduronidase with Special Reference to a Sulphated Disaccharide Derived from Heparin

1982 ◽  
Vol 62 (2) ◽  
pp. 193-201 ◽  
Author(s):  
J. J. Hopwood ◽  
Vivienne Muller
Keyword(s):  
Enzyme Activity ◽  
Competitive Inhibitor ◽  
Ph Profile ◽  
Ph Values ◽  
Substrate Structure ◽  
Cultured Skin ◽  
Bivalent Cations ◽  
Competitive Inhibitors ◽  
Specific Ion Effect ◽  
Hydrolysis Of

1. Iduronosyl anhydro[1-3H]mannitol 6-sulphate (IMs), iduronosyl anhydro[1-3H]mannitol, phenyl iduronide (PhI) and 4-methylumbelliferyl iduronide have been compared as substrates for the diagnostic estimation of α-l-iduronidase activity present in human leucocyte and cultured skin fibroblast homogenates. The pH profile of leucocyte and fibroblast iduronidase activity was dependent on substrate structure and concentration, the ionic strength and the nature of the buffer ion used in the assay mixture. 2. NaCl, KBr and Na2SO4 were shown to be parabolic competitive inhibitors of IMs activity, the K1 with fibroblast homogenates being 34, 13.4 and 0.22 mmol/l respectively. NaCl and KBr were shown to have a primary salt effect on the interaction between enzyme and substrate but Na2SO4 appeared to have a specific ion effect at a cationic binding site. 3. NaCl inhibited the hydrolysis of IMs at all pH values studied, whereas NaCl concentrations of 0.2 mol/l inhibited the hydrolysis of PhI at pH values below 3.8 but activated the enzyme at higher incubation pH values. 4. Cu2+ was shown to be a potent non-competitive inhibitor of IMs enzyme activity with an apparent Kl, of approximately 0.02 mmol/l. The enzyme activity was inhibited by Fe2+ (Kl 4 mmol/l), Hg2+ and Ag+, but has not significantly been affected by other univalent or bivalent cations. 5. The presence of solvent and salt effects on apparent Km but not the Vmax. suggest that the binding of IMs to the enzyme involved charge neutralization, and it is inferred that two cationic binding sites are present at the active site. It is postulated that one site specifically binds to the iduronic acid carboxyl group, the other to the 6-sulphate of the anhydromannitol moiety.

scholarly journals A BIOCHEMICAL AND CYTOCHEMICAL STUDY OF ADENOSINE TRIPHOSPHATASE ACTIVITY IN THE PHLOEM OF NICOTIAN A TABACUM

1974 ◽  
Vol 60 (1) ◽  
pp. 221-235 ◽  
Author(s):  
Jamison Gilder ◽  
James Cronshaw
Keyword(s):  
Enzyme Activity ◽  
Atpase Activity ◽  
Atp Hydrolysis ◽  
Phloem Transport ◽  
Cytochemical Localization ◽  
Gtp Hydrolysis ◽  
Cytochemical Study ◽  
P Protein ◽  
Competitive Inhibitors ◽  
Hydrolysis Of

A biochemical and cytochemical study has been made of the distribution of ATPase in mature and differentiating phloem cells of Nicotiana tabacum and of the substrate specificity and effects of fixation on enzyme activity. Homogenates of unfixed leaf midveins and midveins fixed in formaldehyde-glutaraldehyde were assayed for enzyme activity by determining the amount of Pi, liberated per milligram of protein from various substrates in a 30 min period at pH 7.2. In fresh homogenates, hydrolysis of ATP was not significantly different from that of ITP, CTP, and UTP. Hydrolysis of GTP was slightly higher than that of ATP. ATP hydrolysis by fresh homogenates was 17% more extensive than that of ADP, 76% more extensive than that of 5'-AMP, and was inhibited by fluoride and p-chloromercuribenzoate (PCMB). There was little or no hydrolysis of the competitive inhibitors 2'- and 3'-AMP nor with the alternate substrates p-nitrophenylphosphate (PNP) or ß-glycerophosphate (ß-GP). In homogenates of material fixed in formaldehyde-glutaraldehyde for 1¼ h, ATPase activity was 13% preserved. Hydrolysis of ATP by fixed homogenates was not significantly different from that of ADP, 5'-AMP, ITP, CTP, and GTP. Hydrolysis of UTP was lower. Fluoride and PCMB inhibited fixed ATPase activity. The results of cytochemical localization experiments using a lead phosphate precipitation technique were in agreement with the biochemical results. Similar localization patterns were obtained with the nucleoside triphosphates ATP, CTP, GTP, ITP, and UTP. Activity was also localized with ADP and 5'-AMP but not with the competitive inhibitors 2'- and 3'-AMP, nor with PNP or ß-GP. Little or no reaction product was deposited in other controls incubated without substrate or with substrate plus fluoride, PCMB, or N-ethylmaleimide. ATPase activity was demonstrated chiefly at the plasma membrane of mature and differentiating phloem cells and was associated with the P-protein of mature sieve elements. It is suggested that the phloem transport system derives its energy from the demonstrated nucleoside triphosphatase activity.

scholarly journals Kinetics of substrate hydrolysis and inhibition by mipafox of paraoxon-preinhibited hen brain esterase activity

1986 ◽  
Vol 236 (2) ◽  
pp. 503-507 ◽  
Author(s):  
C D Carrington ◽  
M B Abou-Donia
Keyword(s):  
Kinetic Parameters ◽  
Organophosphorus Compounds ◽  
Model Fit ◽  
Component Model ◽  
Low Concentrations ◽  
Two Component ◽  
High Concentrations ◽  
Kinetics Of ◽  
Hydrolysis Of ◽  
Organophosphorus Inhibitor

For the purpose of assessing the neurotoxic potential of organophosphorus compounds, it has been determined that paraoxon-preinhibited hen brain has both neurotoxicant (mipafox)-sensitive (neurotoxic esterase; NTE) and -insensitive esterase components. Several experiments designed to investigate the kinetic parameters governing the reaction of these esterases with two substrates and one organophosphorus inhibitor are presented. First, kinetic parameters for the hydrolysis of phenyl valerate and phenyl phenylacetate were measured. At 37 degrees C, the Km values of NTE for phenyl valerate and phenyl phenylacetate were found to be about 1.4 × 10(-3) and 1.6 × 10(-4) M respectively. At 25 degrees C, the Km of NTE for phenyl valerate was determined to be about 2.4 × 10(-3) M. Secondly, the kinetic constants of NTE for mipafox were measured at both 25 degrees C and 37 degrees C. With either phenyl valerate or phenyl phenylacetate as substrate, the Km at 37 degrees C was determined to be about 1.8 × 10(-4) M, and the phosphorylation constant (k2) was about 1.1 min-1. For phenyl valerate only, the Km at 25 degrees C was found to be about 6 × 10(-4) M, and the k2 was about 0.7 min-1. The data obtained at 25 degrees C were analysed by using a two-component model without formation of Michaelis complex, a two-component model with formation of Michaelis complex on the second component (NTE), or a three-component model without formation of Michaelis complex. The fact that the Michaelis model fit the data significantly better than either of the other two models indicates that the higher apparent Ki values that occur with low concentrations of mipafox are due to formation of Michaelis complex at high concentrations, rather than because of the presence of two NTE isoenzymes, as has been suggested by other investigators.

scholarly journals High concentrations of aldehydes slow the reaction of cytoplasmic aldehyde dehydrogenase with thiol-group modifiers

1985 ◽  
Vol 228 (3) ◽  
pp. 765-767 ◽  
Author(s):  
T M Kitson
Keyword(s):  
Binding Site ◽  
Aldehyde Dehydrogenase ◽  
Active Site ◽  
Thiol Group ◽  
High Concentrations ◽  
Hydrolysis Of

High concentrations of aldehydes slow the inactivation of cytoplasmic aldehyde dehydrogenase by disulfiram and also slow the reaction of the enzyme with 2,2'-dithiodipyridine. It is concluded that a low-affinity aldehyde-binding site is probably the site at which thiol-group modifiers react with aldehyde dehydrogenase, as well as being the active site for hydrolysis of 4-nitrophenyl acetate.

scholarly journals The inhibition of glucokinase and glycerokinase from Bacillus stearothermophilus by the triazine dye Procion Blue MX-3G

1987 ◽  
Vol 246 (1) ◽  
pp. 83-88 ◽  
Author(s):  
C R Goward ◽  
M D Scawen ◽  
T Atkinson
Keyword(s):  
Enzyme Activity ◽  
Binding Site ◽  
Kinetic Data ◽  
Bacillus Stearothermophilus ◽  
Reactive Dye ◽  
Affinity Probe ◽  
High Concentrations ◽  
Triazine Dye

Glucokinase from Bacillus stearothermophilus was irreversibly inactivated by the reactive dichlorotriazinyl dye Procion Blue MX-3G at pH 8.0. The enzyme was protected from inactivation by the substrate MgATP. Kinetic data implied that the dye occupied the MgATP-binding site. The apparent Km values for MgATP and D-glucose were found to be 70 microM and 210 microM respectively, and the Kd of the pure reactive dye was 16 microM; 1 mol of the pure reactive dye bound to 1 mol of glucokinase subunit. The dye was shown to have potential as an affinity probe for glucokinase. Glycerokinase from the same bacterium was inactivated by Procion Blue MX-3G at high concentrations (5 mM), but only after a period of increased enzyme activity. Kinetic data indicated that the dye preferentially attacked the glycerol-binding site. The apparent Km values for MgATP and glycerol were found to be 38 microM and 13 microM respectively, and 4 mol of reactive dye could be bound to 1 mol of glycerokinase subunit. This was surprising in view of the MgATP-dependent elution of glycerokinase from immobilized Procion Blue MX-3G.

scholarly journals THE KINETICS OF TRYPSIN DIGESTION

1924 ◽  
Vol 6 (4) ◽  
pp. 439-452
Author(s):  
John H. Northrop
Keyword(s):  
Enzyme Concentration ◽  
Experimental Results ◽  
Trypsin Digestion ◽  
First Approximation ◽  
High Enzyme ◽  
Rate Of Hydrolysis ◽  
High Concentrations ◽  
Kinetics Of ◽  
Hydrolysis Of ◽  
Substrate Concentrations

The rate of hydrolysis of edestin by trypsin at 40° and in the presence of 1 M NaCl has been studied. Under these conditions the enzyme is rapidly inactivated and the equation for the reaction may be written See PDF for Equation in which Et is the concentration of enzyme during the interval (T1–T2). This equation has been tested by determining the enzyme concentration at various times during the reaction and substituting these values in the above equation. The experimental results agree with this formula when the initial enzyme or edestin concentrations are varied. No anomalous results of varying substrate concentrations are apparent. It can further be assumed as a first approximation that the enzyme is decomposing monomolecularly and the equation can then be written See PDF for Equation This equation is also satisfactory provided high enzyme concentrations and low edestin concentrations are used. With high concentrations of edestin and low trypsin the effects of the products of the reaction on the enzyme become too large to be neglected and the formula no longer holds.

Uptake of l-valyl-l-Valine and Glycylsarcosine by Hamster Jejunum in Vitro

1982 ◽  
Vol 62 (6) ◽  
pp. 617-626 ◽  
Author(s):  
D. Burston ◽  
R. A. Wapnir ◽  
E. Taylor ◽  
D. M. Matthews
Keyword(s):  
Competitive Inhibition ◽  
Side Chains ◽  
Low Concentrations ◽  
Peptide Component ◽  
High Concentrations ◽  
Kinetics Of Uptake ◽  
Peptide Uptake ◽  
Kinetics Of ◽  
Hydrolysis Of

1. Preliminary observations concerned with the effect of the lipophilic properties of the amino acid side-chains of peptides on their apparent affinity for uptake by rings of everted hamster jejunum showed that of the series glycylglycine, l-alanyl-l-alanine, l-valyl-l-valine and l-leucyl-l-leucine, with increasingly lipophilic side-chains, l-valyl-l-valine, not l-leucyl-l-leucine, was the most powerful inhibitor of uptake of the hydrolysis-resistant dipeptide glycylsarcosine. This apparently anomalous observation indicated a need for further investigation, and this paper reports investigations of the kinetics of uptake of l-valyl-l-valine and of competition for uptake between l-valyl-l-valine and glycylsarcosine. 2. l-Valyl-l-valine was capable of complete competitive inhibition of mediated uptake of glycylsarcosine. Free l-valine did not inhibit mediated uptake of glycylsarcosine. Glycylsarcosine could inhibit mediated uptake of l-valyl-l-valine only partially, but a mixture of glycylsarcosine and l-valine was capable of producing complete inhibition of mediated uptake of l-valyl-l-valine. 3. Investigation of the kinetics of uptake of l-valyl-l-valine indicated two mediated components. Component (a), which disappeared in the presence of free l-leucine, probably represented uptake of free l-valine after hydrolysis of the peptide. Component (b) probably represented peptide uptake. 4. The estimates of Kt obtained for uptake of intact l-valyl-l-valine were many times greater than Ki for inhibition of uptake of glycylsarcosine by l-valyl-l-valine. A possible explanation of the discrepancy is the existence of two pathways for uptake of l-valyl-l-valine and glycylsarcosine, for one of which l-valyl-l-valine has a low Kt (i.e. a high affinity) not readily demonstrable by kinetic analysis. 5. The results suggest that mediated uptake of l-valyl-l-valine is the result of at least two processes, uptake of intact peptide by a mechanism or mechanisms shared with glycylsarcosine and also hydrolysis followed by uptake of free l-valine; estimates of the proportions of intact valine and of free valine taken up by mediated transport suggest that at pH 5 uptake of intact peptide varies from 25% at low concentrations to 55% at high concentrations. They do not explain why l-valyl-l-valine is a stronger inhibitor of uptake of glycylsarcosine than the more lipophilic l-leucyl-l-leucine, but do suggest how such a situation could arise.

Hydrolysis kinetics of dissolved polymer substrates

2002 ◽  
Vol 45 (10) ◽  
pp. 99-104 ◽  
Author(s):  
W.T.M. Sanders ◽  
G. Zeeman ◽  
G. Lettinga
Keyword(s):  
Enzyme Activity ◽  
Laboratory Experiments ◽  
Hydrolysis Rate ◽  
Limiting Factor ◽  
Hydrolysis Kinetics ◽  
Parent Molecule ◽  
Polymer Substrates ◽  
Rate Limiting ◽  
Kinetics Of ◽  
Hydrolysis Of

In this paper, the relation between the hydrolysis rate of dissolved polymer substrates and sludge concentration was investigated in two ways, viz. by laboratory experiments and by computer simulations. In the simulations, the hydrolysis of dissolved polymer components was regarded as a general depolymerisation process in which the bonds of the parent molecule break randomly until only monomer and dimer components remain. The results illustrate that for the hydrolysis of dissolved polymer substrates the enzyme activity is the rate-limiting factor. Moreover, a general depolymerisation process can describe the enzymatic hydrolysis of these components.

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