scholarly journals Structural biology of 11-cis-retinaldehyde production in the classical visual cycle

2018 ◽  
Vol 475 (20) ◽  
pp. 3171-3188 ◽  
Author(s):  
Anahita Daruwalla ◽  
Elliot H. Choi ◽  
Krzysztof Palczewski ◽  
Philip D. Kiser
Keyword(s):  
Structural Biology ◽  
Renewal Process ◽  
Visual Pigment ◽  
Initial Step ◽  
Visual Pigments ◽  
Visual Cycle ◽  
Photon Detection ◽  
The Past ◽  
Vitamin A Derivative ◽  
Phototransduction Cascade

The vitamin A derivative 11-cis-retinaldehyde plays a pivotal role in vertebrate vision by serving as the chromophore of rod and cone visual pigments. In the initial step of vision, a photon is absorbed by this chromophore resulting in its isomerization to an all-trans state and consequent activation of the visual pigment and phototransduction cascade. Spent chromophore is released from the pigments through hydrolysis. Subsequent photon detection requires the delivery of regenerated 11-cis-retinaldehyde to the visual pigment. This trans–cis conversion is achieved through a process known as the visual cycle. In this review, we will discuss the enzymes, binding proteins and transporters that enable the visual pigment renewal process with a focus on advances made during the past decade in our understanding of their structural biology.

scholarly journals Single-particle cryo-EM—How did it get here and where will it go

Science ◽  
2018 ◽  
Vol 361 (6405) ◽  
pp. 876-880 ◽  
Author(s):  
Yifan Cheng
Keyword(s):  
Electron Microscopy ◽  
Structural Biology ◽  
Single Particle ◽  
Electron Crystallography ◽  
The Past ◽  
Cryo Electron Microscopy ◽  
Technological Advances ◽  
The Future ◽  
Electron Cryotomography

Cryo–electron microscopy, or simply cryo-EM, refers mainly to three very different yet closely related techniques: electron crystallography, single-particle cryo-EM, and electron cryotomography. In the past few years, single-particle cryo-EM in particular has triggered a revolution in structural biology and has become a newly dominant discipline. This Review examines the fascinating story of its start and evolution over the past 40-plus years, delves into how and why the recent technological advances have been so groundbreaking, and briefly considers where the technique may be headed in the future.

Spectral absorbance, structure, and population density of photoreceptors in the retina of the lake sturgeon (Acipenser fulvescens)

2007 ◽  
Vol 85 (4) ◽  
pp. 584-587 ◽  
Author(s):  
A.J. Sillman ◽  
E.K. Ong ◽  
E.R. Loew
Keyword(s):  
Visual Pigment ◽  
Visual Pigments ◽  
Lake Sturgeon ◽  
Acipenser Fulvescens ◽  
Long Wavelength ◽  
Rods And Cones ◽  
The North ◽  
Spectral Absorbance ◽  
Dim Light ◽  
Scanning Electron

Lake sturgeon ( Acipenser fulvescens Rafinesque, 1817) photoreceptors were studied with scanning electron microscopy and microspectrophotometry. The retina contains both rods and cones, with cones estimated composing about 30% of the photoreceptor population. Only large single cones were identified and they are similar to those found in other species of the order Acipenseriformes. The rods are large, with long, broad outer segments, and are similar to the dominant rod found in other sturgeons and the North American paddlefish ( Polyodon spathula (Walbaum, 1792)). Mean (SD) rod packing density at 22 624 ± 3 509 rods/mm2 is low compared with those of other animals that function primarily in dim light. The visual pigment of the rods has a mean (SD) peak absorbance (λmax) at 541 ± 2 nm. Three different cone populations were identified: a long wavelength sensitive cone containing a visual pigment with λmax at 619 ± 3 nm; middle wavelength sensitive cone with λmax at 538 ± 1 nm; and short wavelength sensitive cone with λmax at 448 ± 1 nm. All the visual pigments are based on the vitamin A2 chromophore.

The photoreceptors and visual pigments in the retina of the white sturgeon, Acipenser transmontanus

1990 ◽  
Vol 68 (7) ◽  
pp. 1544-1551 ◽  
Author(s):  
A. J. Sillman ◽  
M. D. Spanfelner ◽  
E. R. Loew
Keyword(s):  
Vitamin A ◽  
Visual Pigment ◽  
Visual Pigments ◽  
Spectrophotometric Analysis ◽  
White Sturgeon ◽  
Acipenser Transmontanus ◽  
Light Regimen ◽  
Cone Pigment ◽  
Spectral Absorbance

The photoreceptors in the retina of the white sturgeon, Acipenser transmontanus (Chondrostei), were studied by means of scanning electron microscopy, in situ microspectrophotometry, and spectrophotometric analysis of visual pigment extracts. The white sturgeon retina is simple in that it contains only two morphologically distinct photoreceptors. The retina is dominated by rods with large outer segments, but there is a substantial population (40%) of single cones. Evidence was found for only one rod visual pigment and one cone visual pigment. Peak spectral absorbance (λmax) of the rod pigment is near 539 nm, whereas λmax of the cone pigment is near 605 nm. Both visual pigments are porphyropsin types with chromophores based on vitamin A2. No detectable rhodopsin based on vitamin A1 is ever present, regardless of season or light regimen. The results are discussed in terms of the sturgeon's behavior, as well as the implications for the evolution of color vision.

Visual pigments and oil droplets in diurnal lizards

2002 ◽  
Vol 205 (7) ◽  
pp. 927-938 ◽  
Author(s):  
Ellis R. Loew ◽  
Leo J. Fleishman ◽  
Russell G. Foster ◽  
Ignacio Provencio
Keyword(s):  
Visual Pigment ◽  
Visual Pigments ◽  
Anolis Carolinensis ◽  
Visual Cell ◽  
Oil Droplets ◽  
Oil Droplet ◽  
Long Wavelength ◽  
Apparent Color ◽  
Vitamin A2 ◽  
Insight Into

SUMMARY We report microspectrophotometric (MSP) data for the visual pigments and oil droplets of 17 species of Caribbean anoline lizard known to live in differing photic habitats and having distinctly different dewlap colors. The outgroup Polychrus marmoratus was also examined to gain insight into the ancestral condition. Except for Anolis carolinensis, which is known to use vitamin A2 as its visual pigment chromophore, all anoline species examined possessed at least four vitamin-A1-based visual pigments with maximum absorbance (λmax) at 564, 495,455 and 365 nm. To the previously reported visual pigments for A. carolinensis we add an ultraviolet-sensitive one withλ max at 365 nm. Five common classes of oil droplet were measured, named according to apparent color and associated with specific cone classes — yellow and green in long-wavelength-sensitive (LWS) cones,green only in medium-wavelength-sensitive (MWS) cones and colorless in short-wavelength-sensitive (SWS) and ultraviolet-sensitive (UVS) cones. MSP data showed that the colorless droplet in the SWS cone had significant absorption between 350 and 400 nm, while the colorless droplet in the UVS cone did not. The pattern for Polychrus marmoratus was identical to that for the anoles except for the presence of a previously undescribed visual cell with a rod-like outer segment, a visual pigment with a λmaxof 497 nm and a colorless oil droplet like that in the UVS cones. These findings suggest that anoline visual pigments, as far as they determine visual system spectral sensitivity, are not necessarily adapted to the photic environment or to the color of significant visual targets (e.g. dewlaps).

Visual pigments, oil droplets and cone photoreceptor distribution in the european starling (Sturnus vulgaris)

1998 ◽  
Vol 201 (9) ◽  
pp. 1433-1446 ◽  
Author(s):  
N S Hart ◽  
J C Partridge ◽  
I C Cuthill
Keyword(s):  
Visual Pigment ◽  
Sturnus Vulgaris ◽  
European Starling ◽  
Visual Pigments ◽  
Double Cone ◽  
Temporal Region ◽  
Oil Droplets ◽  
Tetrazolium Chloride ◽  
Oil Droplet ◽  
Single Cone

Microspectrophotometric measurements of retinal photoreceptors from the European starling (Sturnus vulgaris) revealed four classes of single cone, containing visual pigments with wavelengths of maximum absorbance (<IMG src="/images/symbols/lambda.gif" WIDTH="8" HEIGHT="12" ALIGN="BOTTOM" NATURALSIZEFLAG= "3">max) at 563, 504, 449 and close to 362 nm. The two longer-wave-sensitive single cones contained brightly coloured oil droplets which cut off light below 572 and 514 nm, respectively. The 449 nm <IMG src="/images/symbols/lambda.gif" WIDTH="8" HEIGHT="12" ALIGN="BOTTOM" NATURALSIZEFLAG="3">max pigment was associated with a 'colourless' oil droplet with peak measured absorptance below 400 nm. The ultraviolet-sensitive visual pigment was paired with a transparent oil droplet which showed no significant absorption above 350 nm. A single class of double cone was identified, both members of which contained the longwave-sensitive (<IMG src="/images/symbols/lambda.gif" WIDTH="8" HEIGHT= "12" ALIGN="BOTTOM" NATURALSIZEFLAG="3">max 563 nm) visual pigment. The principal member of the double cone contained an oil droplet with a topographically variable cut-off wavelength below 471 nm; the oil droplet found in the accessory member was only measured in the ventral retina and displayed three distinct peaks of absorption at approximately 430, 450 and 480 nm. Rod photoreceptors had a <IMG src="/images/symbols/lambda.gif" WIDTH="8" HEIGHT="12" ALIGN="BOTTOM" NATURALSIZEFLAG="3">max at 503 nm. A new polynomial for fitting visual pigment templates to ultraviolet-sensitive visual pigment data is given. Topographic density measurements of the different cone classes were made using Nitroblue-tetrazolium chloride to label selectively bleached photoreceptors. The two classes of shortwave-sensitive single cone were more abundant in the dorsal retina, and longwave-sensitive single cones were notably less abundant in the dorso-temporal region of the retina, which subserves binocular vision.

scholarly journals Preventing Bio-Bloopers and XFEL Follies: Best Practices from your Friendly Instrument Staff

Crystals ◽  
2020 ◽  
Vol 10 (4) ◽  
pp. 251 ◽  
Author(s):  
Christopher Kupitz ◽  
Raymond G. Sierra
Keyword(s):  
Best Practices ◽  
Structural Biology ◽  
High Speed ◽  
X Ray ◽  
Experimental Planning ◽  
The Past ◽  
Delivery Technique ◽  
Scientific Goal ◽  
Paradigm Shifting ◽  
Serial Femtosecond Crystallography

Serial Femtosecond Crystallography (SFX) at X-ray Free electron Lasers (XFELs) is a relatively new field promising to deliver unparalleled spatial and temporal resolution on biological systems and there dynamics. Over the past decade, though, there have been a handful of results that have truly delivered on these promises. Why? SFX has many paradigm shifting techniques not seen in typical structural biology arenas, such as creating a concentrated slurry of microcrystals rather than a handful of loopable prisms worthy of a catalog photo. Then taking that slurry and high speed jetting them towards the vacuum or helium interation region to destroy less than 1% of your sample and waste the other 99. The literature is full of techniques and methods promising to cure what ails your experiment, yet as an instrument scientist will tell you –and a first author might admit after a few drinks at the conference happy hour—is that there are a lot more failures than the success we published, results may vary. We will walk through a best practices on how to prepare your sample and chose a sample delivery technique that will amerliorate your studies rather than undermine your hardwork and hopefully lead to better experimental planning and execution, inching you closer to that scientific goal and that call from Stockholm. This will be written in a more editorialized fashion and is meant to give the reader an idea of what to try or how they should be thinking. Welcome to SFX, now what?

scholarly journals The spectral transmission of ocular media suggests ultraviolet sensitivity is widespread among mammals

2014 ◽  
Vol 281 (1780) ◽  
pp. 20132995 ◽  
Author(s):  
R. H. Douglas ◽  
G. Jeffery
Keyword(s):  
Energy Level ◽  
Visual Pigment ◽  
High Spatial Resolution ◽  
Mammalian Species ◽  
Visual Pigments ◽  
Spectral Transmission ◽  
Tree Shrews ◽  
Uv Sensitivity ◽  
Ultraviolet Sensitivity ◽  
Ocular Media

Although ultraviolet (UV) sensitivity is widespread among animals it is considered rare in mammals, being restricted to the few species that have a visual pigment maximally sensitive ( λ max ) below 400 nm. However, even animals without such a pigment will be UV-sensitive if they have ocular media that transmit these wavelengths, as all visual pigments absorb significant amounts of UV if the energy level is sufficient. Although it is known that lenses of diurnal sciurid rodents, tree shrews and primates prevent UV from reaching the retina, the degree of UV transmission by ocular media of most other mammals without a visual pigment with λ max in the UV is unknown. We examined lenses of 38 mammalian species from 25 families in nine orders and observed large diversity in the degree of short-wavelength transmission. All species whose lenses removed short wavelengths had retinae specialized for high spatial resolution and relatively high cone numbers, suggesting that UV removal is primarily linked to increased acuity. Other mammals, however, such as hedgehogs, dogs, cats, ferrets and okapis had lenses transmitting significant amounts of UVA (315–400 nm), suggesting that they will be UV-sensitive even without a specific UV visual pigment.

scholarly journals A Guided Tour of the Structural Biology of Gaucher Disease: Acid-β-Glucosidase and Saposin C

2011 ◽  
Vol 2011 ◽  
pp. 1-15 ◽  
Author(s):  
Raquel L. Lieberman
Keyword(s):  
Crystal Structures ◽  
Structural Biology ◽  
Gaucher Disease ◽  
Lysosomal Storage ◽  
The Past ◽  
Current State ◽  
Saposin C ◽  
Prevalent Disease ◽  
Guided Tour ◽  
Insight Into

Mutations in both acid-β-glucosidase (GCase) and saposin C lead to Gaucher disease, the most common lysosomal storage disorder. The past several years have seen an explosion of structural and biochemical information for these proteins, which have provided new insight into the biology and pathogenesis of Gaucher disease, as well as opportunities for new therapeutic directions. Nearly 20 crystal structures of GCase are now available, from different heterologous sources, complexed with different ligands in the active site, in different glycosylation states, as well as one that harbors a prevalent disease-causing mutation, N370S. For saposin C, two NMR and 3 crystal structures have been solved, each with its unique snapshot. This review focuses on the details of these structures to highlight salient common and disparate features that contribute to our current state of knowledge of this complex orphan disease.

scholarly journals The role of retinal photoisomerase in the visual cycle of the honeybee.

1991 ◽  
Vol 97 (1) ◽  
pp. 143-165 ◽  
Author(s):  
W C Smith ◽  
T H Goldsmith
Keyword(s):  
Visual Pigment ◽  
Compound Eye ◽  
Rod Outer Segments ◽  
Visual Cycle ◽  
In Vitro Techniques ◽  
The Third ◽  
Isomerization Processes

The compound eye of the honeybee has previously been shown to contain a soluble retinal photoisomerase which, in vitro, is able to catalyze stereospecifically the photoconversion of all-trans retinal to 11-cis retinal. In this study we combine in vivo and in vitro techniques to demonstrate how the retinal photoisomerase is involved in the visual cycle, creating 11-cis retinal for the generation of visual pigment. Honeybees have approximately 2.5 pmol/eye of retinal associated with visual pigments, but larger amounts (4-12 pmol/eye) of both retinal and retinol bound to soluble proteins. When bees are dark adapted for 24 h or longer, greater than 80% of the endogenous retinal, mostly in the all-trans configuration, is associated with the retinal photoisomerase. On exposure to blue light the retinal is isomerized to 11-cis, which makes it available to an alcohol dehydrogenase. Most of it is then reduced to 11-cis retinol. The retinol is not esterified and remains associated with a soluble protein, serving as a reservoir of 11-cis retinoid available for renewal of visual pigment. Alternatively, 11-cis retinal can be transferred directly to opsin to regenerate rhodopsin, as shown by synthesis of rhodopsin in bleached frog rod outer segments. This retinaldehyde cycle from the honeybee is the third to be described. It appears very similar to the system in another group of arthropods, flies, and differs from the isomerization processes in vertebrates and cephalopod mollusks.

scholarly journals Evolution and the origin of the visual retinoid cycle in vertebrates

2009 ◽  
Vol 364 (1531) ◽  
pp. 2897-2910 ◽  
Author(s):  
Takehiro G. Kusakabe ◽  
Noriko Takimoto ◽  
Minghao Jin ◽  
Motoyuki Tsuda
Keyword(s):  
Visual Pigment ◽  
Photoreceptor Cells ◽  
Light Sensitivity ◽  
Visual Cycle ◽  
Interphotoreceptor Retinoid Binding Protein ◽  
New Genes ◽  
Ascidian Larva ◽  
Cycle Systems ◽  
Subcellular Compartmentalization ◽  
Cellular Compartments

Absorption of a photon by visual pigments induces isomerization of 11- cis -retinaldehyde (RAL) chromophore to all- trans -RAL. Since the opsins lacking 11- cis -RAL lose light sensitivity, sustained vision requires continuous regeneration of 11- cis -RAL via the process called ‘visual cycle’. Protostomes and vertebrates use essentially different machinery of visual pigment regeneration, and the origin and early evolution of the vertebrate visual cycle is an unsolved mystery. Here we compare visual retinoid cycles between different photoreceptors of vertebrates, including rods, cones and non-visual photoreceptors, as well as between vertebrates and invertebrates. The visual cycle systems in ascidians, the closest living relatives of vertebrates, show an intermediate state between vertebrates and non-chordate invertebrates. The ascidian larva may use retinochrome-like opsin as the major isomerase. The entire process of the visual cycle can occur inside the photoreceptor cells with distinct subcellular compartmentalization, although the visual cycle components are also present in surrounding non-photoreceptor cells. The adult ascidian probably uses RPE65 isomerase, and trans -to- cis isomerization may occur in distinct cellular compartments, which is similar to the vertebrate situation. The complete transition to the sophisticated retinoid cycle of vertebrates may have required acquisition of new genes, such as interphotoreceptor retinoid-binding protein, and functional evolution of the visual cycle genes.

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