scholarly journals Naphthoquinone based chemosensors for transition metal ions: experiment and theory

RSC Advances ◽  
2017 ◽  
Vol 7 (87) ◽  
pp. 55163-55174 ◽  
Author(s):  
Prajkta Gosavi-Mirkute ◽  
Amit Patil ◽  
Dipali N. Lande ◽  
Debamitra Chakravarty ◽  
Shridhar P. Gejji ◽  
...  
Keyword(s):  
Transition Metal ◽  
Metal Ions ◽  
Metal Ion ◽  
Ph Effect ◽  
Transition Metal Ions ◽  
Competitive Binding ◽  
Ion Binding ◽  
Solvent Mixtures ◽  
Metal Ion Binding

Naphthoquinone based chemosensors are studied for metal ion binding in methanol–water–triethylamine solvent mixtures. pH effect, M : L stoichiometry and competitive binding of metal ions is studied.

The influence of metal-ion binding on the structure and surface composition of Sonic Hedgehog: a combined classical and hybrid QM/MM MD study

2016 ◽  
Vol 18 (32) ◽  
pp. 22254-22265 ◽  
Author(s):  
Manuel Hitzenberger ◽  
Thomas S. Hofer
Keyword(s):  
Metal Ions ◽  
Sonic Hedgehog ◽  
Binding Sites ◽  
Metal Ion ◽  
Surface Composition ◽  
Quantum Mechanical ◽  
Ion Binding ◽  
Metal Ion Binding ◽  
Structural Impact

The interaction of metal ions with Shh binding-sites and their structural impact are assessed via classical and quantum mechanical simulations.

scholarly journals Functional characterization of the dimerization domain of the ferric uptake regulator (Fur) of Pseudomonas aeruginosa

2006 ◽  
Vol 400 (3) ◽  
pp. 385-392 ◽  
Author(s):  
Erdeni Bai ◽  
Federico I. Rosell ◽  
Bao Lige ◽  
Marcia R. Mauk ◽  
Barbara Lelj-Garolla ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Metal Ions ◽  
Binding Site ◽  
Metal Ion ◽  
Association Constants ◽  
Ion Binding ◽  
Ferric Uptake Regulator ◽  
Metal Ion Binding ◽  
Dimerization Domain ◽  
High Affinity

The functional properties of the recombinant C-terminal dimerization domain of the Pseudomonas aeruginosa Fur (ferric uptake regulator) protein expressed in and purified from Escherichia coli have been evaluated. Sedimentation velocity measurements demonstrate that this domain is dimeric, and the UV CD spectrum is consistent with a secondary structure similar to that observed for the corresponding region of the crystallographically characterized wild-type protein. The thermal stability of the domain as determined by CD spectroscopy decreases significantly as pH is increased and increases significantly as metal ions are added. Potentiometric titrations (pH 6.5) establish that the domain possesses a high-affinity and a low-affinity binding site for metal ions. The high-affinity (sensory) binding site demonstrates association constants (KA) of 10(±7)×106, 5.7(±3)×106, 2.0(±2)×106 and 2.0(±3)×104 M−1 for Ni2+, Zn2+, Co2+ and Mn2+ respectively, while the low-affinity (structural) site exhibits association constants of 1.3(±2)×106, 3.2(±2)×104, 1.76(±1)×105 and 1.5(±2)×103 M−1 respectively for the same metal ions (pH 6.5, 300 mM NaCl, 25 °C). The stability of metal ion binding to the sensory site follows the Irving–Williams order, while metal ion binding to the partial sensory site present in the domain does not. Fluorescence experiments indicate that the quenching resulting from binding of Co2+ is reversed by subsequent titration with Zn2+. We conclude that the domain is a reasonable model for many properties of the full-length protein and is amenable to some analyses that the limited solubility of the full-length protein prevents.

Bromine substituted aminonaphthoquinones: synthesis, characterization, DFT and metal ion binding studies

RSC Advances ◽  
2016 ◽  
Vol 6 (91) ◽  
pp. 88010-88029 ◽  
Author(s):  
Gunjan Agarwal ◽  
Dipali N. Lande ◽  
Debamitra Chakrovarty ◽  
Shridhar P. Gejji ◽  
Prajakta Gosavi-Mirkute ◽  
...  
Keyword(s):  
Metal Ions ◽  
Metal Ion ◽  
Ion Binding ◽  
Metal Ion Binding ◽  
Binding Studies

Bromine substituted aminonaphthoquinones – chemosensors for metal ions.

2,2î-Bipyridine Catalyzed Bleaching of Cotton Fibers with Peracetic Acid

1988 ◽  
Vol 58 (4) ◽  
pp. 198-210 ◽  
Author(s):  
James W. Rucker ◽  
David M. Cates
Keyword(s):  
Transition Metal ◽  
Metal Ions ◽  
Peracetic Acid ◽  
Metal Ion ◽  
Solution Treatment ◽  
Transition Metal Ions ◽  
Ferrous Ion ◽  
Cotton Fibers ◽  
Lauryl Sulfate ◽  
Ferrous Ions

Peracetic acid can be catalyzed to bleach cotton fibers at temperatures as low as 30°C by incorporating 2,2î-bipyridine in the bleach solution. Treatment of the fibers with HCl prior to bleaching reduces bleaching effectiveness by removing trace transition metal ions from the fibers. Sorption of individual ions (Cr+3 Mn+2, Fe+2, Fe+3 Co+2, Ni+2, Cu+2, and Zn+2) by HCl treated cotton fibers prior to bleaching indicates that the ferrous ion produces the greatest catalytic effect, and it is only effective when the metal ion is in the fiber as opposed to in solution. Ferrous ions in the fibers sorb 2,2î-bipyridine from solution to form the tris-2,2î-bipyridine ferrous ion complex that is associated with the fibers, and it is the trischelate associated with the fibers that catalyzes bleaching. The effects of pH, temperature, and concentrations of 2,2î-bipyridine, sodium lauryl sulfate, and transition metal ions (in the fibers and in solution) on bleaching effectiveness and peracetic acid decomposition have been studied, and a bleaching mechanism is proposed.

Intermediate-stage transition metal ion exchange in a zeolite X

1982 ◽  
Vol 35 (7) ◽  
pp. 1335 ◽  
Author(s):  
M Chatterjee ◽  
D Ganguli
Keyword(s):  
Ion Exchange ◽  
Transition Metal ◽  
Metal Ions ◽  
Metal Ion ◽  
Intermediate Stage ◽  
Transition Metal Ions ◽  
Zeolite X ◽  
Counter Ions ◽  
Metal Ion Exchange ◽  
Exchange Behaviour

The exchange behaviour of some divalent transition metal ions M2+ (Zn2+, Cu2+, Ni2+, Co2+, Mn2+) in a zeolite NaX (SiO2/Al2O3 2.75) was studied at intermediate stages before equilibrium. The equivalent counter ion supply in the solution, given by the equivalent ratio of the two counter ions 2M2+/Na+, was found to be critical in determining the saturation level of exchange. The series of relative abilities of exchange was very similar to the well known selectivity series at equilibrium. It is suggested that water exchange of the metal ions in solution could be one of the factors controlling the relative ease of ion exchange.

New multidentate ligands. XXI. Synthesis, proton, and metal ion binding affinities of N,N′,N″-tris[2-(N-hydroxycarbamoyl)ethyl]-1,3,5-benzenetricarboxamide (BAMTPH)

1983 ◽  
Vol 61 (12) ◽  
pp. 2740-2744 ◽  
Author(s):  
Isao Yoshida ◽  
Ichiro Murase ◽  
Ramunas J. Motekaitis ◽  
Arthur E. Martell
Keyword(s):  
Metal Ions ◽  
Metal Ion ◽  
Binding Constants ◽  
Cation Binding ◽  
Ion Binding ◽  
Binding Affinities ◽  
Metal Ion Binding ◽  
Trivalent Metal ◽  
Equilibrium Data ◽  
Trivalent Metal Ions

Synthesis of a new tris-bidentate multidentate ligand, N,N′,N″-tris[2-(N-hydroxycarbamoyl)ethyl]-1,3,5-benzenetricarboxamide (BAMTPH), designed for the binding of trivalent metal ions such as Fe(III), Ga(III), and Al(III), is described. Its cation binding affinities for hydrogen ion and for Fe(III), Co(II), Ni(II), Cu(II), Zn(II), Ga(III), and Al(III) ions are described, and the equilibrium data are compared with those of analogous ligands. The binding constants of trivalent metal ions with the ligand do not show a chelate effect relative to the binding to individual bidentate hydroxamic acids.

scholarly journals Computational approaches for de novo design and redesign of metal-binding sites on proteins

2017 ◽  
Vol 37 (2) ◽  
Author(s):  
Gunseli Bayram Akcapinar ◽  
Osman Ugur Sezerman
Keyword(s):  
Metal Ions ◽  
Metal Binding ◽  
Binding Sites ◽  
Metal Ion ◽  
De Novo ◽  
De Novo Design ◽  
Ion Binding ◽  
Chemical Transformations ◽  
Metal Ion Binding ◽  
Metal Binding Sites

Metal ions play pivotal roles in protein structure, function and stability. The functional and structural diversity of proteins in nature expanded with the incorporation of metal ions or clusters in proteins. Approximately one-third of these proteins in the databases contain metal ions. Many biological and chemical processes in nature involve metal ion-binding proteins, aka metalloproteins. Many cellular reactions that underpin life require metalloproteins. Most of the remarkable, complex chemical transformations are catalysed by metalloenzymes. Realization of the importance of metal-binding sites in a variety of cellular events led to the advancement of various computational methods for their prediction and characterization. Furthermore, as structural and functional knowledgebase about metalloproteins is expanding with advances in computational and experimental fields, the focus of the research is now shifting towards de novo design and redesign of metalloproteins to extend nature’s own diversity beyond its limits. In this review, we will focus on the computational toolbox for prediction of metal ion-binding sites, de novo metalloprotein design and redesign. We will also give examples of tailor-made artificial metalloproteins designed with the computational toolbox.

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