scholarly journals Molecular mechanism of helicase on graphene-based hybridization reaction platform for microRNA detection

RSC Advances ◽  
2017 ◽  
Vol 7 (58) ◽  
pp. 36444-36449 ◽  
Author(s):  
Xiaojun Fan ◽  
Yi Qi ◽  
Zhaoyi Shi ◽  
Yongkang Lv ◽  
Yujing Guo

The Escherichia coli RecQ helicase was introduced for the first time to demonstrate its molecular mechanism on hybridization reaction for the detection of microRNA, using graphene oxide (GO) as nano-quencher.

2020 ◽  
Vol 17 ◽  
Author(s):  
Igor K. Yakuschenko ◽  
Nataliya N. Pozdeeva ◽  
Viktoriya A. Mumyatova ◽  
Alexey A. Terentiev ◽  
Svyatoslav Ya. Gadomsky

: Iso-octenidine, an isomer of octenidine dihydrochloride, was synthesized and studied for the first time. Isooctenidine was demonstrated to be 3-fold more soluble in water in comparison to original octenidine, and both substances had remarkably similar antibacterial activity (tested on Escherichia Coli and Micrococcus luteus).


2021 ◽  
Author(s):  
Xuhua Mo ◽  
Tobias A. M. Gulder

Over 30 biosynthetic gene clusters for natural tetramate have been identified. This highlight reviews the biosynthetic strategies for formation of tetramic acid unit for the first time, discussing the individual molecular mechanism in detail.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Charles R. Midgett ◽  
Kacey Marie Talbot ◽  
Jessica L. Day ◽  
George P. Munson ◽  
F. Jon Kull

AbstractEnteric infections caused by the gram-negative bacteria enterotoxigenic Escherichia coli (ETEC), Vibrio cholerae, Shigella flexneri, and Salmonella enterica are among the most common and affect billions of people each year. These bacteria control expression of virulence factors using a network of transcriptional regulators, some of which are modulated by small molecules as has been shown for ToxT, an AraC family member from V. cholerae. In ETEC the expression of many types of adhesive pili is dependent upon the AraC family member Rns. We present here the 3 Å crystal structure of Rns and show it closely resembles ToxT. Rns crystallized as a dimer via an interface similar to that observed in other dimeric AraC’s. Furthermore, the structure of Rns revealed the presence of a ligand, decanoic acid, that inhibits its activity in a manner similar to the fatty acid mediated inhibition observed for ToxT and the S. enterica homologue HilD. Together, these results support our hypothesis that fatty acids regulate virulence controlling AraC family members in a common manner across a number of enteric pathogens. Furthermore, for the first time this work identifies a small molecule capable of inhibiting the ETEC Rns regulon, providing a basis for development of therapeutics against this deadly human pathogen.


2019 ◽  
Vol 55 (62) ◽  
pp. 9104-9107 ◽  
Author(s):  
Tongxu Gu ◽  
Zhaohui Ren ◽  
Xiang Li ◽  
Jie Huang ◽  
Gaorong Han

We have developed a photoluminescent membrane for microRNA detection, consisting of mesoporous silica nanoparticles (CaF2:Yb/Ho@MSNs) attached, via single stranded DNA probes, to flexible polyurethane fibres coated with graphene oxide (GO).


1980 ◽  
Vol 26 (2) ◽  
pp. 232-234
Author(s):  
Nell C. Roberts ◽  
Beverly O. Freeman ◽  
Henry B. Bradford Jr.

For the first time in nearly 4 decades of surveillance, H2S positive Escherichia coli have been isolated from Calcasieu Lake and River. These results are reported because of recent clinical interest in these organisms.


Nanoscale ◽  
2012 ◽  
Vol 4 (19) ◽  
pp. 5840 ◽  
Author(s):  
Zhuoxuan Lu ◽  
Liming Zhang ◽  
Yan Deng ◽  
Song Li ◽  
Nongyue He

2010 ◽  
Vol 192 (22) ◽  
pp. 5866-5873 ◽  
Author(s):  
Hsu-Yuan Fu ◽  
Yu-Cheng Lin ◽  
Yung-Ning Chang ◽  
Hsiaochu Tseng ◽  
Ching-Che Huang ◽  
...  

ABSTRACT Microbial rhodopsins, a diverse group of photoactive proteins found in Archaea, Bacteria, and Eukarya, function in photosensing and photoenergy harvesting and may have been present in the resource-limited early global environment. Four different physiological functions have been identified and characterized for nearly 5,000 retinal-binding photoreceptors, these being ion transporters that transport proton or chloride and sensory rhodopsins that mediate light-attractant and/or -repellent responses. The greatest number of rhodopsins previously observed in a single archaeon had been four. Here, we report a newly discovered six-rhodopsin system in a single archaeon, Haloarcula marismortui, which shows a more diverse absorbance spectral distribution than any previously known rhodopsin system, and, for the first time, two light-driven proton transporters that respond to the same wavelength. All six rhodopsins, the greatest number ever identified in a single archaeon, were first shown to be expressed in H. marismortui, and these were then overexpressed in Escherichia coli. The proteins were purified for absorption spectra and photocycle determination, followed by measurement of ion transportation and phototaxis. The results clearly indicate the existence of a proton transporter system with two isochromatic rhodopsins and a new type of sensory rhodopsin-like transducer in H. marismortui.


2008 ◽  
Vol 74 (24) ◽  
pp. 7821-7823 ◽  
Author(s):  
Kai Linke ◽  
Nagarajan Periasamy ◽  
Matthias Ehrmann ◽  
Roland Winter ◽  
Rudi F. Vogel

ABSTRACT High hydrostatic pressure (HHP) is suggested to influence the structure and function of membranes and/or integrated proteins. We demonstrate for the first time HHP-induced dimer dissociation of membrane proteins in vivo with Vibrio cholerae ToxR variants in Escherichia coli reporter strains carrying ctx::lacZ fusions. Dimerization ceased at 20 to 50 MPa depending on the nature of the transmembrane segments rather than on changes in the ToxR lipid bilayer environment.


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