MicroRNAs regulate the main events in rice drought stress response by manipulating the water supply to shoots

2017 ◽  
Vol 13 (11) ◽  
pp. 2289-2302 ◽  
Author(s):  
Ehsan Mohseni Fard ◽  
Behnam Bakhshi ◽  
Mohammad Farsi ◽  
Amin Mirshamsi Kakhki ◽  
Nava Nikpay ◽  
...  
Keyword(s):  
Drought Stress ◽  
Stress Response ◽  
Water Supply ◽  
Abiotic Stresses ◽  
Biological Processes ◽  
Biotic And Abiotic Stresses ◽  
Regulatory Rnas

MicroRNAs (miRNAs) are small endogenous regulatory RNAs that are involved in a variety of biological processes related to proliferation, development, and response to biotic and abiotic stresses.

scholarly journals Infection with an asymptomatic virus in rice results in a delayed drought response

2020 ◽  
Vol 47 (3) ◽  
pp. 239 ◽  
Author(s):  
Jaymee R. Encabo ◽  
Reena Jesusa A. Macalalad-Cabral ◽  
Jerlie Mhay K. Matres ◽  
Sapphire Charlene Thea P. Coronejo ◽  
Gilda B. Jonson ◽  
...  
Keyword(s):  
Drought Stress ◽  
Abiotic Stresses ◽  
Water Status ◽  
Drought Response ◽  
Plant Responses ◽  
Leaf Rolling ◽  
Rice Tungro Spherical Virus ◽  
Biotic And Abiotic Stresses ◽  
Rice Plants ◽  
Increased Susceptibility

Infection of viruses in plants often modifies plant responses to biotic and abiotic stresses. In the present study we examined the effects of Rice tungro spherical virus (RTSV) infection on drought response in rice. RTSV infection delayed the onset of leaf rolling by 1–2 days. During the delay in drought response, plants infected with RTSV showed higher stomatal conductance and less negative leaf water potential under drought than those of uninfected plants, indicating that RTSV-infected leaves were more hydrated. Other growth and physiological traits of plants under drought were not altered by infection with RTSV. An expression analysis of genes for drought response-related transcription factors showed that the expression of OsNAC6 and OsDREB2a was less activated by drought in RTSV-infected plants than in uninfected plants, further suggesting improved water status of the plants due to RTSV infection. RTSV accumulated more in plants under drought than in well-watered plants, indicating the increased susceptibility of rice plants to RTSV infection by drought. Collectively, these results indicated that infection with RTSV can transiently mitigate the influence of drought stress on rice plants by increasing leaf hydration, while drought increased the susceptibility of rice plants to RTSV.

scholarly journals The Maize WRKY Transcription Factor ZmWRKY40 Confers Drought Resistance in Transgenic Arabidopsis

2018 ◽  
Vol 19 (9) ◽  
pp. 2580 ◽  
Author(s):  
Chang-Tao Wang ◽  
Jing-Na Ru ◽  
Yong-Wei Liu ◽  
Jun-Feng Yang ◽  
Meng Li ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Transcription Factors ◽  
Drought Stress ◽  
Stress Response ◽  
Abiotic Stresses ◽  
Transgenic Arabidopsis ◽  
Regulatory Elements ◽  
Wrky Transcription Factor ◽  
Growth And Yield ◽  
Abiotic Stress Response

Abiotic stresses restrict the growth and yield of crops. Plants have developed a number of regulatory mechanisms to respond to these stresses. WRKY transcription factors (TFs) are plant-specific transcription factors that play essential roles in multiple plant processes, including abiotic stress response. At present, little information regarding drought-related WRKY genes in maize is available. In this study, we identified a WRKY transcription factor gene from maize, named ZmWRKY40. ZmWRKY40 is a member of WRKY group II, localized in the nucleus of mesophyll protoplasts. Several stress-related transcriptional regulatory elements existed in the promoter region of ZmWRKY40. ZmWRKY40 was induced by drought, high salinity, high temperature, and abscisic acid (ABA). ZmWRKY40 could rapidly respond to drought with peak levels (more than 10-fold) at 1 h after treatment. Overexpression of ZmWRKY40 improved drought tolerance in transgenic Arabidopsis by regulating stress-related genes, and the reactive oxygen species (ROS) content in transgenic lines was reduced by enhancing the activities of peroxide dismutase (POD) and catalase (CAT) under drought stress. According to the results, the present study may provide a candidate gene involved in the drought stress response and a theoretical basis to understand the mechanisms of ZmWRKY40 in response to abiotic stresses in maize.

scholarly journals Genome-Wide Identification and Functional Analysis of U-Box E3 Ubiquitin Ligases Gene Family Related to Drought Stress Response in Chinese white pear (Pyrus bretschneideri)

2021 ◽  
Author(s):  
Chunmeng Wang ◽  
Bobo Song ◽  
Yuqin Dai ◽  
Shaoling Zhang ◽  
Xiaosan Huang
Keyword(s):  
Stress Response ◽  
Gene Family ◽  
Abiotic Stresses ◽  
Cold Treatment ◽  
Ubiquitin Ligases ◽  
Expression Level ◽  
Biological Processes ◽  
Over Expression ◽  
Qrt Pcr ◽  
Chinese White

Abstract Background The plant U-box(PUB) proteins are a family of ubiquitin ligases (E3) enzymes that involved in diverse biological processes, as well as in responses to plant stress response. However, the characteristics and functional divergence of the PUB gene family has not yet been previously studied in the Chinese White Pear (Pyrus bretschneideri). Results In the present study, we identified 62 PbrPUBsin Chinese white pear genome. Based on the phylogenetic relationship, 62 PUB genes were clustered into five groups. The conserved motif and gene structure analysis provided further evidence to support the classification phylogenetic tree. The PbrPUB genes were unevenly distribution on 17 pear chromosomes, chromosome 15 housed most member of PUB family, with eight PUB genes. Cis-acting element analysis indicted PUB genes might participate in diverse biological processes, especially in the response to abiotic stresses. Based on RNA-data from “Dangshansuli” at seven tissues, we found that PUB genes exhibited diverse of expression level in seven tissues, and qRT-PCR experiment further support the reliable of RNA-Seq data. To identify candidate genes associated with resistance, we conducted qRT-PCR experiment the expression level of pear seed plant under four abiotic stresses, including: ABA, dehydration, salt and cold treatment. One candidate PUB gene associated with dehydration stress was selected to conduct further functional experiment. Subcellular localization revealed PbrPUB18 gene was located on cell nucleus. Furthermore, heterologous over-expression of PbrPUB18 in Arabidopsis indicated that the over-expression of PbrPUB18 could enhance resistance in drought treatment. In conclusions, we systematically identified the PUB genes in pear, and provided valuable information for the molecular mechanism of PUB genes in pear.

scholarly journals Discovery of Drought-Responsive Transposable Element-Related Peach miRNAs

2017 ◽  
Author(s):  
Asli Kurden Pekmezci ◽  
Gökhan Karakülah ◽  
Turgay Unver
Keyword(s):  
Transcription Factors ◽  
Drought Stress ◽  
Stress Response ◽  
Transposable Element ◽  
Small Rna ◽  
Computational Analysis ◽  
Drought Response ◽  
Specific Target ◽  
Specific Manner ◽  
Regulatory Rnas

AbstractMicroRNAs (miRNA) are small non-coding regulatory RNAs that suppress their specific target transcripts either by cleavage or inhibition of translation. Transposable element related miRNAs (TE-miRNA) have been subjected to various studies so far, and some of them were found to be involved in stress response in plants. Here, small RNA (sRNA) sequencing libraries generated from drought stress treated peach tissues were utilized to identify TE-miRNAs. Our computational analysis led to the identification of 63 TE-miRNAs, which were either locating nearby of any TE (TE-related), or overlapping with a TE (TE-derived). Furthermore, 13 out of 63 TE-miRNAs were designated as drought-responsive. Expression pattern of the identified drought-responsive TE-miRNAs are observed as tissue-specific manner, and their specific target transcripts are mostly related to transcription factors and growth-associated genes. Our findings suggest that miRNAs in relation with transposable elements might be key molecular players in the regulation of drought response.

scholarly journals Genome-wide identification and functional analysis of U-box E3 ubiquitin ligases gene family related to drought stress response in Chinese white pear (Pyrus bretschneideri)

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Chunmeng Wang ◽  
Bobo Song ◽  
Yuqin Dai ◽  
Shaoling Zhang ◽  
Xiaosan Huang
Keyword(s):  
Stress Response ◽  
Gene Family ◽  
Abiotic Stresses ◽  
Cold Treatment ◽  
Ubiquitin Ligases ◽  
Expression Level ◽  
Biological Processes ◽  
Over Expression ◽  
Qrt Pcr ◽  
Chinese White

Abstract Background The plant U-box (PUB) proteins are a family of ubiquitin ligases (E3) enzymes that involved in diverse biological processes, as well as in responses to plant stress response. However, the characteristics and functional divergence of the PUB gene family have not yet been previously studied in the Chinese white pear (Pyrus bretschneideri). Results In the present study, we identified 62 PbrPUBs in Chinese white pear genome. Based on the phylogenetic relationship, 62 PUB genes were clustered into five groups. The results of conserved motif and gene structure analysis supported the classification phylogenetic tree. The PbrPUB genes were unevenly distribution on 17 pear chromosomes, chromosome 15 housed most member of PUB family, with eight PUB genes. Cis-acting element analysis indicated that PUB genes might participate in diverse biological processes, especially in the response to abiotic stresses. Based on RNA-data from ‘Dangshansuli’ at seven tissues, we found that PUB genes exhibited diverse of expression level in seven tissues, and qRT-PCR experiment further supported the reliable of RNA-Seq data. To identify candidate genes associated with resistance, we conducted qRT-PCR experiment the expression level of pear seed plant under four abiotic stresses, including: ABA, dehydration, salt and cold treatment. One candidate PUB gene associated with dehydration stress was selected to conduct further functional experiment. Subcellular localization revealed PbrPUB18 protein was located on cell nucleus. Furthermore, heterologous over-expression of PbrPUB18 in Arabidopsis indicated that the over-expression of PbrPUB18 could enhance resistance in drought treatment. In conclusions, we systematically identified the PUB genes in pear, and provided useful knowledge for functional identification of PUB genes in pear.

Abiotic Stress Tolerance in Soybean : Regulated by ncRNA

2016 ◽  
Vol 3 (1) ◽  
Author(s):  
YASIN JESHIMA KHAN ◽  
HUSNARA Tyagi ◽  
Anil kumar Singh ◽  
Santosh kumar. Magadum
Keyword(s):  
Abiotic Stresses ◽  
Target Genes ◽  
Abiotic Stress Tolerance ◽  
Crop Improvement ◽  
Vital Role ◽  
Grain Legume ◽  
Biological Processes ◽  
Small Interfering Rnas ◽  
Cellular Environment ◽  
Non Coding Rnas

Plants respond through a cascade of reactions resulting in varied cellular environment leading to alterations in the patterns of protein expression resulting in phonotypic changes. Single cell genomics and global proteomics came out to be powerful tools and efficient techniques in studying stress tolerant plants. Non-coding RNAs are a distinct class of regulatory RNAs in plants and animals that control a variety of biological processes. Small ncRNAs play a vital role in post transcriptional gene regulation by either translational repression or by inducing mRNA cleavage. The major classes of small RNAs include microRNAs (miRNAs) and small interfering RNAs (siRNAs), which differ in their biogenesis. miRNAs control the expression of cognate target genes by binding to complementary sequences, resulting in cleavage or translational inhibition of the target RNAs. siRNAs too have a similar structure, function, and biogenesis like miRNAs but are derived from long double-stranded RNAs and can often direct DNA methylation at target sequences.In this review, we focus on the involvement of ncRNAs in comabting abiotic stresses of soybean. This review emphasis on previously known miRNAs as they play important role in several abiotic stresses like drought, salinity, chilling and heat stress by their diverse roles in mediating biological processes like gene expression, chromatin formation, defense of genome against invading viruses. This review attempts to elucidate the various kinds of non-coding RNAs explored, their discovery, biogenesis, functions, and response for different type of abiotic stresses and future aspects for crop improvement in the context of soybean, a representative grain legume.

scholarly journals Effects of maize organ-specific drought stress response on yields from transcriptome analysis

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Baomei Wang ◽  
Can Liu ◽  
Dengfeng Zhang ◽  
Chunmei He ◽  
Juren Zhang ◽  
...  
Keyword(s):  
Drought Stress ◽  
Stress Response ◽  
Transcriptome Analysis ◽  
Organ Specific

scholarly journals An R2R3-type myeloblastosis transcription factor MYB103 is involved in phosphorus remobilization

2020 ◽  
Vol 2 (1) ◽  
Author(s):  
Fangwei Yu ◽  
Shenyun Wang ◽  
Wei Zhang ◽  
Hong Wang ◽  
Li Yu ◽  
...  
Keyword(s):  
Cell Wall ◽  
Transcription Factor ◽  
Abiotic Stresses ◽  
Myb Transcription Factor ◽  
Ethylene Signaling ◽  
Biotic And Abiotic Stresses ◽  
P Deficiency ◽  
P Concentration ◽  
Increased Sensitivity

Abstract The members of myeloblastosis transcription factor (MYB TF) family are involved in the regulation of biotic and abiotic stresses in plants. However, the role of MYB TF in phosphorus remobilization remains largely unexplored. In the present study, we show that an R2R3 type MYB transcription factor, MYB103, is involved in phosphorus (P) remobilization. MYB103 was remarkably induced by P deficiency in cabbage (Brassica oleracea var. capitata L.). As cabbage lacks the proper mutant for elucidating the mechanism of MYB103 in P deficiency, another member of the crucifer family, Arabidopsis thaliana was chosen for further study. The transcript of its homologue AtMYB103 was also elevated in response to P deficiency in A. thaliana, while disruption of AtMYB103 (myb103) exhibited increased sensitivity to P deficiency, accompanied with decreased tissue biomass and soluble P concentration. Furthermore, AtMYB103 was involved in the P reutilization from cell wall, as less P was released from the cell wall in myb103 than in wildtype, coinciding with the reduction of ethylene production. Taken together, our results uncover an important role of MYB103 in the P remobilization, presumably through ethylene signaling.

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