Importance of protein flexibility in molecular recognition: a case study on Type-I1/2 inhibitors of ALK

2018 ◽  
Vol 20 (7) ◽  
pp. 4851-4863 ◽  
Author(s):  
Xiaotian Kong ◽  
Huiyong Sun ◽  
Peichen Pan ◽  
Feng Zhu ◽  
Shan Chang ◽  
...  

Anaplastic lymphoma kinase (ALK) has been regarded as a promising target for the therapy of various cancers.

2020 ◽  
Vol 48 (20) ◽  
pp. 11566-11576
Author(s):  
Jintong Zhou ◽  
Zhenghui Huang ◽  
Li Zheng ◽  
Zhoufei Hei ◽  
Zhiyong Wang ◽  
...  

Abstract Aminoacyl-tRNA synthetases are attractive targets for the development of antibacterial, antifungal, antiparasitic agents and for the treatment of other human diseases. Lysyl-tRNA synthetase (LysRS) from this family has been validated as a promising target for the development of antimalarial drugs. Here, we developed a high-throughput compatible assay and screened 1215 bioactive compounds to identify Plasmodium falciparum cytoplasmic LysRS (PfLysRS) inhibitor. ASP3026, an anaplastic lymphoma kinase inhibitor that was used in clinical trials for the treatment of B-cell lymphoma and solid tumors, was identified as a novel PfLysRS inhibitor. ASP3026 suppresses the enzymatic activity of PfLysRS at nanomolar potency, which is >380-fold more effective than inhibition of the human counterpart. In addition, the compound suppressed blood-stage P. falciparum growth. To understand the molecular mechanism of inhibition by ASP3026, we further solved the cocrystal structure of PfLysRS-ASP3026 at a resolution of 2.49 Å, providing clues for further optimization of the compound. Finally, primary structure-activity relationship analyses indicated that the inhibition of PfLysRS by ASP3026 is highly structure specific. This work not only provides a new chemical scaffold with good druggability for antimalarial development but also highlights the potential for repurposing kinase-inhibiting drugs to tRNA synthetase inhibitors to treat human diseases.


2016 ◽  
Vol 11 (2) ◽  
pp. 131-138 ◽  
Author(s):  
Ghizlene Lahlou ◽  
Marion Classe ◽  
Michel Wassef ◽  
Pierre-Alexandre Just ◽  
Nicolas Le Clerc ◽  
...  

2012 ◽  
Vol 17 (2) ◽  
pp. 123-143 ◽  
Author(s):  
Christina Schonherr ◽  
Bengt Hallberg ◽  
Ruth Palmer

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