Design and synthesis of a novel fluorescent benzo[g]imidazo[4,5-c]quinoline nucleoside for monitoring base-pair-induced protonation with cytosine: distinguishing cytosine via changes in the intensity and wavelength of fluorescence

2016 ◽  
Vol 14 (16) ◽  
pp. 3934-3942 ◽  
Author(s):  
Shogo Siraiwa ◽  
Azusa Suzuki ◽  
Ryuzi Katoh ◽  
Yoshio Saito
Keyword(s):  
Base Pair ◽  
Pair Formation ◽  
Design And Synthesis

A novel fluorescent benzo[g]imidazo[4,5-c]quinoline nucleoside BIQA was developed and used to monitor BIQA–C base-pair formation in ODN duplexes.

scholarly journals Analysis of intermolecular base pair formation of prohead RNA of the phage ø29 DNA packaging motor using NMR spectroscopy

2007 ◽  
Vol 36 (3) ◽  
pp. 839-848 ◽  
Author(s):  
Aya Kitamura ◽  
Paul J. Jardine ◽  
Dwight L. Anderson ◽  
Shelley Grimes ◽  
Hiroshi Matsuo
Keyword(s):  
Nmr Spectroscopy ◽  
Base Pair ◽  
Dna Packaging ◽  
Pair Formation ◽  
Dna Packaging Motor

Adenosine-1,3-diazaphenoxazine Derivative for Selective Base Pair Formation with 8-Oxo-2′-deoxyguanosine in DNA

2011 ◽  
Vol 133 (19) ◽  
pp. 7272-7275 ◽  
Author(s):  
Yosuke Taniguchi ◽  
Ryota Kawaguchi ◽  
Shigeki Sasaki
Keyword(s):  
Base Pair ◽  
Pair Formation

scholarly journals Total Synthesis of a Functional Designer Eukaryotic Chromosome

Science ◽  
2014 ◽  
Vol 344 (6179) ◽  
pp. 55-58 ◽  
Author(s):  
Narayana Annaluru ◽  
Héloïse Muller ◽  
Leslie A. Mitchell ◽  
Sivaprakash Ramalingam ◽  
Giovanni Stracquadanio ◽  
...  
Keyword(s):  
Total Synthesis ◽  
Base Pair ◽  
Stop Codon ◽  
Bacterial Genomes ◽  
Transfer Rnas ◽  
Eukaryotic Chromosome ◽  
Design And Synthesis ◽  
Biochemical Pathways ◽  
Chromosome Iii ◽  
Subtelomeric Regions

Rapid advances in DNA synthesis techniques have made it possible to engineer viruses, biochemical pathways and assemble bacterial genomes. Here, we report the synthesis of a functional 272,871–base pair designer eukaryotic chromosome, synIII, which is based on the 316,617–base pair native Saccharomyces cerevisiae chromosome III. Changes to synIII include TAG/TAA stop-codon replacements, deletion of subtelomeric regions, introns, transfer RNAs, transposons, and silent mating loci as well as insertion of loxPsym sites to enable genome scrambling. SynIII is functional in S. cerevisiae. Scrambling of the chromosome in a heterozygous diploid reveals a large increase in a-mater derivatives resulting from loss of the MATα allele on synIII. The complete design and synthesis of synIII establishes S. cerevisiae as the basis for designer eukaryotic genome biology.

ChemInform Abstract: Design and Synthesis of Heterocyclic Cations for Specific DNA Recognition: From AT-Rich to Mixed-Base-Pair DNA Sequences.

ChemInform ◽  
2014 ◽  
Vol 45 (29) ◽  
pp. no-no
Author(s):  
Yun Chai ◽  
Ananya Paul ◽  
Michael Rettig ◽  
W. David Wilson ◽  
David W. Boykin
Keyword(s):  
Dna Sequences ◽  
Base Pair ◽  
Dna Recognition ◽  
Design And Synthesis ◽  
Heterocyclic Cations

scholarly journals Intrastrand Base Pair Formation in Repetitive DNA Sequences

2018 ◽  
Vol 114 (3) ◽  
pp. 597a-598a
Author(s):  
Marisa Mitchell ◽  
Carolina Dunbar ◽  
Thao Tran ◽  
Brian Cannon
Keyword(s):  
Repetitive Dna ◽  
Dna Sequences ◽  
Base Pair ◽  
Pair Formation ◽  
Repetitive Dna Sequences

Design and synthesis of solid state structures with conjugate acid–base pair interactions

CrystEngComm ◽  
2012 ◽  
Vol 14 (11) ◽  
pp. 3851 ◽  
Author(s):  
Sathyanarayana Reddy Perumalla ◽  
Changquan Calvin Sun
Keyword(s):  
Solid State ◽  
Base Pair ◽  
Acid Base ◽  
Design And Synthesis ◽  
Conjugate Acid ◽  
Solid State Structures ◽  
Pair Interactions

Design and Synthesis of a New Peptide Recognizing a Specific 16-Base-Pair Site of DNA

1995 ◽  
Vol 117 (23) ◽  
pp. 6287-6291 ◽  
Author(s):  
Changmoon Park ◽  
Judy L. Campbell ◽  
William A. Goddard
Keyword(s):  
Base Pair ◽  
Design And Synthesis

Heats of base pair formation with adenine and uracil analogs

1968 ◽  
Vol 31 (1) ◽  
pp. 91-99 ◽  
Author(s):  
Jesse S. Binford ◽  
Dennis M. Holloway
Keyword(s):  
Base Pair ◽  
Pair Formation

Additional Base-Pair Formation in DNA Duplexes by a Double-Headed Nucleotide

2012 ◽  
Vol 18 (24) ◽  
pp. 7434-7442 ◽  
Author(s):  
Charlotte S. Madsen ◽  
Sarah Witzke ◽  
Pawan Kumar ◽  
Kushuma Negi ◽  
Pawan K. Sharma ◽  
...  
Keyword(s):  
Base Pair ◽  
Pair Formation ◽  
Dna Duplexes ◽  
Additional Base
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