A comparison of ab initio quantum-mechanical and experimental D0 binding energies of eleven H-bonded and eleven dispersion-bound complexes

2015 ◽  
Vol 17 (40) ◽  
pp. 26645-26652 ◽  
Author(s):  
Susanta Haldar ◽  
Ramachandran Gnanasekaran ◽  
Pavel Hobza
Keyword(s):  
Ab Initio ◽  
Zero Point ◽  
Binding Energies ◽  
Quantum Mechanical ◽  
Interaction Energies ◽  
Dissociation Energies ◽  
Vibrational Energies

Dissociation energies (D0) of 11 H-bonded and 11 dispersion-bound complexes were calculated as the sum of interaction energies and the change of zero-point vibrational energies (ΔZPVE).

Gas and solution phase thermochemistry and transition energies of NH2• and NH3•+, and their aquo complexes: an ab initio study

1994 ◽  
Vol 72 (3) ◽  
pp. 471-483 ◽  
Author(s):  
Dake Yu ◽  
Arvi Rauk ◽  
David A. Armstrong
Keyword(s):  
Ab Initio ◽  
Binding Energies ◽  
Solution Phase ◽  
Interaction Energies ◽  
Free Energies ◽  
Transition Energies ◽  
Bonding Interaction ◽  
Ab Initio Structure ◽  
Total Energies ◽  
Free Energy Of Solution

Ab initio calculations were performed on several aquo complexes of NH2•, and NH3•+, and on monomeric parent species. The geometries were optimized at the HF/6-31 + G* level and the vibrational frequencies were calculated. The total energies and the binding energies of complexes were evaluated at the MP2/6-31 + G* + ZPE level of theory. Gas and aqueous solution phase thermodynamic properites of NH2• and NH3•+ and several other species were calculated. The examination of solution phase properties of the radicals was facilitated by study of the structures and transition energies of aquo complexes. H-bonding interaction energies decreased in the order [Formula: see text] but were generally stronger than σ–σ* interactions involving the unpaired electron. From calculations with the CIS method, the weak absorption observed at 520 nm for aqueous NH2• is confirmed as a 2B1 → 2A1 transition, while the stronger NH2• absorption occurring below 250 nm and the absorption of NH3•+, which rises monotonically below 370 nm, are attributed to solvent-to-solute charge transfer bands. The solution free energies and related E0 values for NH2• and NH3•+ are in agreement with those of Stanbury. The ab initio structure studies show that water protons are bound to N, and proton transfer from solvent in reaction [18], NH2• + e− + H2O → NH3 + OH−, is likely to be the dominant redox reaction of NH2• in alkaline solution. The free energy of solution of NH3•+ is shown to be larger than that of [Formula: see text].

Quantum Mechanical Interpretation of the Ultra-Low Energy Methyl-Rotation Dynamics in Porous Metal-Organic Frameworks Probed by Low-Frequency Vibrational Spectroscopy and ab initio Simulations

2018 ◽  
Author(s):  
Qi Li ◽  
Adam J. Zaczek ◽  
Timothy M. Korter ◽  
J. Axel Zeitler ◽  
Michael T. Ruggiero
Keyword(s):  
Ab Initio ◽  
Metal Organic Frameworks ◽  
Low Frequency ◽  
Rotor Dynamics ◽  
Quantum Mechanical ◽  
Valuable Insight ◽  
Void Space ◽  
Ab Initio Simulations ◽  
Metal Organic ◽  
Insight Into

<div>Understanding the nature of the interatomic interactions present within the pores of metal-organic frameworks</div><div>is critical in order to design and utilize advanced materials</div><div>with desirable applications. In ZIF-8 and its cobalt analogue</div><div>ZIF-67, the imidazolate methyl-groups, which point directly</div><div>into the void space, have been shown to freely rotate - even</div><div>down to cryogenic temperatures. Using a combination of ex-</div><div>perimental terahertz time-domain spectroscopy, low-frequency</div><div>Raman spectroscopy, and state-of-the-art ab initio simulations,</div><div>the methyl-rotor dynamics in ZIF-8 and ZIF-67 are fully charac-</div><div>terized within the context of a quantum-mechanical hindered-</div><div>rotor model. The results lend insight into the fundamental</div><div>origins of the experimentally observed methyl-rotor dynamics,</div><div>and provide valuable insight into the nature of the weak inter-</div><div>actions present within this important class of materials.</div>

Ion solvation by dipolar aprotic solvents. An ab initio study

1987 ◽  
Vol 52 (1) ◽  
pp. 6-13 ◽  
Author(s):  
Petr Kyselka ◽  
Zdeněk Havlas ◽  
Ivo Sláma
Keyword(s):  
Ab Initio ◽  
Geometry Optimization ◽  
Molecular Structures ◽  
Dimethyl Sulphoxide ◽  
Ion Solvation ◽  
Interaction Energies ◽  
Ab Initio Study ◽  
Solvation Energies ◽  
Dipolar Aprotic Solvents ◽  
Complete Geometry Optimization

The paper deals with the solvation of Li+, Be2+, Na+, Mg2+, and Al3+ ions in dimethyl sulphoxide, dimethylformamide, acetonitrile, and water. The ab initio quantum chemical method was used to calculate the solvation energies, molecular structures, and charge distributions for the complexes water···ion, acetonitrile···ion, dimethyl sulphoxide···ion, and dimethylformamide···ion. The interaction energies were corrected for the superposition error. Complete geometry optimization was performed for the complex water···ion. Some generalizations are made on the basis of the results obtained.

scholarly journals Interactions between large molecules pose a puzzle for reference quantum mechanical methods

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Yasmine S. Al-Hamdani ◽  
Péter R. Nagy ◽  
Andrea Zen ◽  
Dennis Barton ◽  
Mihály Kállay ◽  
...  
Keyword(s):  
Experimental Information ◽  
Quantum Mechanical ◽  
Interaction Energies ◽  
Small Organic Molecules ◽  
Large Molecules ◽  
Reference Information ◽  
Mechanical Methods ◽  
Non Covalent Interactions ◽  
Semi Empirical ◽  
Covalent Interactions

AbstractQuantum-mechanical methods are used for understanding molecular interactions throughout the natural sciences. Quantum diffusion Monte Carlo (DMC) and coupled cluster with single, double, and perturbative triple excitations [CCSD(T)] are state-of-the-art trusted wavefunction methods that have been shown to yield accurate interaction energies for small organic molecules. These methods provide valuable reference information for widely-used semi-empirical and machine learning potentials, especially where experimental information is scarce. However, agreement for systems beyond small molecules is a crucial remaining milestone for cementing the benchmark accuracy of these methods. We show that CCSD(T) and DMC interaction energies are not consistent for a set of polarizable supramolecules. Whilst there is agreement for some of the complexes, in a few key systems disagreements of up to 8 kcal mol−1 remain. These findings thus indicate that more caution is required when aiming at reproducible non-covalent interactions between extended molecules.

scholarly journals A Review on Combination of Ab Initio Molecular Dynamics and NMR Parameters Calculations

2021 ◽  
Vol 22 (9) ◽  
pp. 4378
Author(s):  
Anna Helena Mazurek ◽  
Łukasz Szeleszczuk ◽  
Dariusz Maciej Pisklak
Keyword(s):  
Molecular Dynamics ◽  
Ab Initio ◽  
Small Amplitude ◽  
Ab Initio Molecular Dynamics ◽  
Quantum Mechanical ◽  
Time Step ◽  
Noticeable Effect ◽  
Nmr Parameters ◽  
Mechanical Methods ◽  
Simulation Time

This review focuses on a combination of ab initio molecular dynamics (aiMD) and NMR parameters calculations using quantum mechanical methods. The advantages of such an approach in comparison to the commonly applied computations for the structures optimized at 0 K are presented. This article was designed as a convenient overview of the applied parameters such as the aiMD type, DFT functional, time step, or total simulation time, as well as examples of previously studied systems. From the analysis of the published works describing the applications of such combinations, it was concluded that including fast, small-amplitude motions through aiMD has a noticeable effect on the accuracy of NMR parameters calculations.

scholarly journals Large Stabilization Effects by Intramolecular Beryllium Bonds in Ortho-Benzene Derivatives

Molecules ◽  
2021 ◽  
Vol 26 (11) ◽  
pp. 3401
Author(s):  
Tsai I-Ting ◽  
M. Merced Montero-Campillo ◽  
Ibon Alkorta ◽  
José Elguero ◽  
Manuel Yáñez
Keyword(s):  
Reaction Scheme ◽  
Binding Energies ◽  
Intramolecular Interactions ◽  
Isodesmic Reaction ◽  
Bond Critical Point ◽  
Interaction Energies ◽  
Benzene Derivatives ◽  
Covalent Interaction ◽  
Beryllium Bond ◽  
Donor And Acceptor

Intramolecular interactions are shown to be key for favoring a given structure in systems with a variety of conformers. In ortho-substituted benzene derivatives including a beryllium moiety, beryllium bonds provide very large stabilizations with respect to non-bound conformers and enthalpy differences above one hundred kJ·mol−1 are found in the most favorable cases, especially if the newly formed rings are five or six-membered heterocycles. These values are in general significantly larger than hydrogen bonds in 1,2-dihidroxybenzene. Conformers stabilized by a beryllium bond exhibit the typical features of this non-covalent interaction, such as the presence of a bond critical point according to the topology of the electron density, positive Laplacian values, significant geometrical distortions and strong interaction energies between the donor and acceptor quantified by using the Natural Bond Orbital approach. An isodesmic reaction scheme is used as a tool to measure the strength of the beryllium bond in these systems in terms of isodesmic energies (analogous to binding energies), interaction energies and deformation energies. This approach shows that a huge amount of energy is spent on deforming the donor–acceptor pairs to form the new rings.

Exact vibrational energies of non-rotating H2O and D2O using an accurate ab initio potential

1988 ◽  
Vol 150 (3-4) ◽  
pp. 269-274 ◽  
Author(s):  
Joel M. Bowman ◽  
Andrzej Wierzbicki ◽  
Jose Zúñiga
Keyword(s):  
Ab Initio ◽  
Vibrational Energies
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