Qualitative/chiral sensing of amino acids by naked-eye fluorescence change based on morphological transformation and hierarchizing in supramolecular assemblies of pyrene-conjugated glycolipids

2015 ◽  
Vol 51 (55) ◽  
pp. 11104-11107 ◽  
Author(s):  
Naohiro Kameta ◽  
Mitsutoshi Masuda ◽  
Toshimi Shimizu
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Supramolecular Assemblies ◽  
Morphological Transformation ◽  
Specific Amino Acid ◽  
Color Changes ◽  
Naked Eye ◽  
Fluorescence Color ◽  
Fluorescence Change ◽  
Chiral Sensing

Supramolecular assemblies exhibited fluorescence-color changes in response to not only a specific amino acid but also the chirality of the recognized amino acid.

Transport of L-tyrosine by B16/F10 melanoma cells: the effect of the intracellular content of other amino acids

1990 ◽  
Vol 97 (3) ◽  
pp. 479-485
Author(s):  
J.R. Jara ◽  
J.H. Martinez-Liarte ◽  
F. Solano ◽  
R. Penafiel
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Initial Rate ◽  
Aromatic Amino Acids ◽  
Melanoma Cells ◽  
Transport Systems ◽  
Specific Amino Acid ◽  
Intracellular Content ◽  
Tyrosine Hydroxylation ◽  
In Cells

The uptake of L-Tyr by B16/F10 malignant melanocytes in culture has been studied. These melanoma cells can either be depleted of amino acids by 1 h preincubation in Hanks' isotonic medium or preloaded with a specific amino acid by 1 h preincubation in the same solution containing 2 mM of the amino acid to be preloaded. By means of these pretreatments, it is shown that the rate of L-Tyr uptake is greatly dependent on the content of other amino acids inside the cells. The L-Tyr uptake is higher in cells preloaded with amino acids transported by the L and ASC systems than in cells depleted of amino acids or preloaded with amino acids transported by the A system. It is concluded that L-Tyr is mainly taken up by an exchange mechanism with other amino acids mediated by the L1 system, although the ASC system can also participate in the process. In agreement with that, the homo-exchange performed by cells preloaded with unlabelled L-Tyr is more efficient than any other hetero-exchange, although L-Dopa, the product of tyrosine hydroxylation in melanin synthesis, is almost as efficient as L-Tyr. Apart from aromatic amino acids, melanoma cells preloaded with L-Met and L-His also yield a high initial rate of L-Tyr uptake. The results herein suggest that melanoma cells do not have transport systems specific for L-Tyr, even if this amino acid is needed to carry out the differential pathway of this type of cells, melanosynthesis.

scholarly journals ANALISIS ASAM AMINO PENSTIMULASI SEKRESI INSULIN DALAM BIJI KECIPIR, BIJI ASAM, DAN BIJI KELOR DENGAN HPLC

Jurnal Kimia ◽  
2016 ◽  
Author(s):  
Dita Rizkiyanti ◽  
Ni Made Suaniti ◽  
Ketut Ratnayani
Keyword(s):  
Amino Acids ◽  
Insulin Secretion ◽  
Amino Acid ◽  
Amino Acid Content ◽  
Total Content ◽  
Winged Bean ◽  
Specific Amino Acid ◽  
Treatment Of Diabetes ◽  
Limited Protein ◽  
Potential Content

Seeds are a source of high protein when compared with other parts of the plant. Compared to soy bean, the use of winged bean seeds, tamarind seeds, moringa seeds as protein sources are still very limited. Protein composed of several amino acids bond together to form a polypeptide. Some amino acids have been investigated to act as stimulating insulin secretion, namely, arginine, alanine, phenylalanine, isoleucine, and lysine. The aim of this study was to determine the potential content of amino acids stimulating the secretion of insulin in winged bean seeds, tamarind seeds, and moringa seeds. Based on the total content of amino acids in each seeds, the results showed that moringa seeds have the highest levels of total amino acids stimulating insulin secretion (16.4%), followed by winged bean seeds (16.2%), and tamarind seeds (12.1%). But if seen by the levels of each amino acid, the winged bean seeds on average had the highest amino acid content. The highest levels of arginine, alanine, phenylalanine, isoleucine, and leucine were found in winged bean seeds, while only one specific amino acid i.e. lysine was found to be the highest level on moringa seeds. It can be concluded that the most potential seeds as a source of amino acids stimulating insulin was the winged bean seeds, that will be useful in the prevention or treatment of diabetes mellitus.

QUALITATIVE STUDIES OF SOIL MICROORGANISMS: IX. AMINO ACID REQUIREMENTS OF RHIZOSPHERE BACTERIA

1950 ◽  
Vol 28c (1) ◽  
pp. 1-6 ◽  
Author(s):  
R. H. Wallace ◽  
A. G. Lochhead
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Soil Microorganisms ◽  
Maximum Growth ◽  
Defined Medium ◽  
Chemically Defined Medium ◽  
Special Significance ◽  
Specific Amino Acid ◽  
Pronounced Decrease ◽  
Amino Acid Requirements

A study was made of the more specific amino acid requirements of bacteria from the rhizospheres of clover, flax, and wheat plants for which a chemically defined medium containing 23 amino acids provided essentials for maximum growth. Of seven groups of amino acids, the sulphur-containing group (cysteine, methionine, and taurine) was found to be of special significance, the omission of this group resulting in a pronounced decrease in the percentage of organisms able to develop. Further study of organisms dependent upon this group of amino acids for growth showed methionine to be by far the most essential compound. While evident for bacteria from the rhizosphere of all three crops, the effect was more pronounced in the case of clover than with flax or wheat.

scholarly journals A BODIPY-Based Fluorescent Sensor for Amino Acids Bearing Thiol

Proceedings ◽  
2019 ◽  
Vol 41 (1) ◽  
pp. 18
Author(s):  
Edurne Avellanal-Zaballa ◽  
Ágata Ramos-Torres ◽  
Alejandro Prieto-Castañeda ◽  
Fernando García-Garrido ◽  
Jorge Bañuelos ◽  
...  
Keyword(s):  
Amino Acids ◽  
Fluorescent Sensor ◽  
Spectral Band ◽  
Synthetic Route ◽  
Naked Eye ◽  
Surrounding Environment ◽  
Low Concentrations ◽  
Fluorescence Color ◽  
Band Profile

Herein, we describe the synthetic route to access a red-emitting BODIPY from its α-diformylated precursor. The photophysical signatures of this dye are sensitive to the presence of thiol-containing amino acids (like cysteine, homocysteine, and glutathione) in the surrounding environment. This sensor provides up to three detection channels to monitor and quantify these biomolecules, even at low concentrations (down to micromolar). Moreover, owing to the pronounced splitting of the spectral band profile induced by these amino acids, the detection can be visualized following just the evolution of the fluorescence color by the naked eye.

THE RELATIONSHIP BETWEEN SOIL BACTERIA WITH SIMPLE NUTRITIONAL REQUIREMENTS AND THOSE REQUIRING AMINO ACIDS

1957 ◽  
Vol 3 (1) ◽  
pp. 73-80 ◽  
Author(s):  
T. M. B. Payne ◽  
J. W. Rouatt ◽  
A. G. Lochhead
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Soil Bacteria ◽  
Single Case ◽  
The Other ◽  
Nutritional Requirements ◽  
Soil Organisms ◽  
Specific Amino Acid ◽  
The Relationship ◽  
Maximum Development

Twenty-two of 30 representative soil bacteria having simple nutritional requirements, in that they showed maximum development in a medium of inorganic salts and sugar, were found to be able to synthesize a variety of amino acids, though in no single case were more than four ninhydrin-positive substances found. The culture filtrates permitted the growth of amino-acid-requiring bacteria to the extent that they contained the specific amino acid or acids required by strains of the latter group. The findings point to an associative action between these nutritional groups of soil organisms and suggest that the preferential stimulation in the rhizosphere of bacteria requiring amino acids may be ascribed in part to the ability of the other group of bacteria, which are numerically increased in the rhizosphere, to synthesize amino acids.

Changes in plasma amino acid patterns and wool growth in response to abomasal injections of amino acids during late pregnancy and early lactation

1993 ◽  
Vol 44 (5) ◽  
pp. 959 ◽  
Author(s):  
CA Stewart ◽  
DG Masters ◽  
IH Williams ◽  
PJ Connell
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Late Pregnancy ◽  
Early Lactation ◽  
Growth Responses ◽  
Specific Amino Acid ◽  
Protein Deposition ◽  
Wool Growth ◽  
Limiting Amino Acids ◽  
Sulfur Containing

Provision of sulfur-containing amino acids into the abomasum has increased wool production in non-reproducing sheep and, on the basis of such studies, they have generally been considered as the primary limiting nutrients for wool growth. The specific amino acid needs of reproducing ewes were investigated in the current study. Three groups of pregnant ewes were fitted with temporary abomasal fistulae. For the last 3-4 weeks of pregnancy and the first 3 weeks of lactation, solutions containing sodium hydroxide (as a carrier) or methionine or a mixture of valine, arginine, lysine and threonine (VALT) were injected into the abomasum twice per day. The injection of methionine did not increase protein deposition during pregnancy; this was indicated by the failure of the treatment to lower the concentration of other amino acids in plasma, or increase liveweight, lamb birth weight or wool growth. Responses in early lactation were different with the methionine injected sheep having a lower concentration of free lysine, valine, alanine and serine in plasma, indicating an increased rate of protein deposition, and a faster growth rate in the ewes. Injections of VALT caused a decrease in the concentration of cystine and methionine in plasma and depressed wool growth and tensile strength. Theresults indicate that a lack of methionine was not limiting protein deposition during late pregnancy, but may have been during early lactation. Valine, arginine, lysine and threonine were not the primary limiting amino acids in late pregnancy or early lactation.

CodonAdjust: a software for in silico design of a mutagenesis library with specific amino acid profiles

2019 ◽  
Vol 32 (11) ◽  
pp. 503-511
Author(s):  
Thuy Duong Nguyen ◽  
Yutaka Saito ◽  
Tomoshi Kameda
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Mathematical Optimization ◽  
Amino Acid Profile ◽  
Nucleotide Composition ◽  
Specific Amino Acid ◽  
Software Implementations ◽  
Amino Acid Profiles ◽  
Complementarity Determining Regions ◽  
Manual Tasks

Abstract In protein engineering, generation of mutagenesis libraries is a key step to study the functions of mutants. To generate mutants with a desired composition of amino acids (AAs), a codon consisting of a mixture of nucleotides is widely applied. Several computational methods have been proposed to calculate a codon nucleotide composition for generating a given amino acid profile based on mathematical optimization. However, these previous methods need to manually tune weights of amino acids in objective functions, which are time-consuming and, more importantly, lack publicly available software implementations. Here, we develop CodonAdjust, a software to adjust a codon nucleotide composition for mimicking a given amino acid profile. We propose different options of CodonAdjust, which provide various customizations in practical scenarios such as setting a guaranteeing threshold for the frequencies of amino acids without any manual tasks. We demonstrate the capability of CodonAdjust in the experiments on the complementarity-determining regions (CDRs) of antibodies and T-cell receptors (TCRs) as well as millions of amino acid profiles from Pfam. These results suggest that CodonAdjust is a productive software for codon design and may accelerate library generation. CodonAdjust is freely available at https://github.com/tiffany-nguyen/CodonAdjust. Paper edited by Dr. Jeffery Saven, Board Member for PEDS.

scholarly journals Mapping mutational effects along the evolutionary landscape of HIV envelope

eLife ◽  
2018 ◽  
Vol 7 ◽  
Author(s):  
Hugh K Haddox ◽  
Adam S Dingens ◽  
Sarah K Hilton ◽  
Julie Overbaugh ◽  
Jesse D Bloom
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Long Range ◽  
The Other ◽  
Single Amino Acid ◽  
Specific Amino Acid ◽  
Viral Growth ◽  
Amino Acid Mutations ◽  
Hiv Envelope ◽  
Hiv Evolution

The immediate evolutionary space accessible to HIV is largely determined by how single amino acid mutations affect fitness. These mutational effects can shift as the virus evolves. However, the prevalence of such shifts in mutational effects remains unclear. Here, we quantify the effects on viral growth of all amino acid mutations to two HIV envelope (Env) proteins that differ at>100 residues. Most mutations similarly affect both Envs, but the amino acid preferences of a minority of sites have clearly shifted. These shifted sites usually prefer a specific amino acid in one Env, but tolerate many amino acids in the other. Surprisingly, shifts are only slightly enriched at sites that have substituted between the Envs—and many occur at residues that do not even contact substitutions. Therefore, long-range epistasis can unpredictably shift Env’s mutational tolerance during HIV evolution, although the amino acid preferences of most sites are conserved between moderately diverged viral strains.

scholarly journals Ammonium-Dependent Shortening of CLS in Yeast Cells Starved for Essential Amino Acids Is Determined by the Specific Amino Acid Deprived, through Different Signaling Pathways

2013 ◽  
Vol 2013 ◽  
pp. 1-10 ◽  
Author(s):  
Júlia Santos ◽  
Cecília Leão ◽  
Maria João Sousa
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Essential Amino Acid ◽  
Essential Amino Acids ◽  
Amino Acid Starvation ◽  
Yeast Cells ◽  
Environmental Interventions ◽  
Specific Amino Acid ◽  
Chronological Life Span ◽  
In Cells

Ammonium (NH4+) leads to chronological life span (CLS) shortening inSaccharomyces cerevisiaeBY4742 cells, particularly evident in cells starved for auxotrophy-complementing amino acids (leucine, lysine, and histidine) simultaneously. Here, we report that the effect ofNH4+on aging yeast depends on the specific amino acid they are deprived of. Compared with no amino acid starvation, starvation for leucine alone or in combination with histidine resulted in the most pronouncedNH4+-induced CLS shortening, whereas starvation for lysine, alone or in combination with histidine resulted in the least sensitivity toNH4+. We also show thatNH4+-induced CLS shortening is mainly mediated by Tor1p in cells starved for leucine or histidine but by Ras2p in cells starved for lysine, and in nonstarved cells. Sch9p protected cells from the effect ofNH4+under all conditions tested (starved or nonstarved cells), which was associated with Sch9p-dependent Hog1p phosphorylation. Our data show thatNH4+toxicity can be modulated through manipulation of the specific essential amino acid supplied to cells and of the conserved Ras2p, Tor1p, and Sch9p regulators, thus providing new clues to the development of environmental interventions for CLS extension and to the identification of new therapeutic targets for diseases associated with hyperammonemia.

Sign in / Sign up

Export Citation Format

Share Document