The fluorine atom as a halogen bond donor, viz. a positive site

CrystEngComm ◽  
2011 ◽  
Vol 13 (22) ◽  
pp. 6593 ◽  
Author(s):  
Pierangelo Metrangolo ◽  
Jane S. Murray ◽  
Tullio Pilati ◽  
Peter Politzer ◽  
Giuseppe Resnati ◽  
...  
Keyword(s):  
Fluorine Atom ◽  
Halogen Bond ◽  
Positive Site

scholarly journals Halogen Bond Interactions of Novel HIV-1 Protease Inhibitors (PI) (GRL-001-15 and GRL-003-15) with the Flap of Protease Are Critical for Their Potent Activity against Wild-Type HIV-1 and Multi-PI-Resistant Variants

2019 ◽  
Vol 63 (6) ◽  
Author(s):  
Shin-ichiro Hattori ◽  
Hironori Hayashi ◽  
Haydar Bulut ◽  
Kalapala Venkateswara Rao ◽  
Prasanth R. Nyalapatla ◽  
...  
Keyword(s):  
Antiviral Activity ◽  
Protease Inhibitors ◽  
Active Site ◽  
Fluorine Atom ◽  
Halogen Bond ◽  
The Novel ◽  
Wild Type ◽  
Flap Region ◽  
Hiv 1

ABSTRACTWe generated two novel nonpeptidic HIV-1 protease inhibitors (PIs), GRL-001-15 and GRL-003-15, which contain unique crown-like tetrahydropyranofuran (Crn-THF) and P2′-cyclopropyl-aminobenzothiazole (Cp-Abt) moieties as P2 and P2′ ligands, respectively. GRL-001-15 and GRL-003-15 havemeta-monofluorophenyl andpara-monofluorophenyl at the P1 site, respectively, exert highly potent activity against wild-type HIV-1 with 50% effective concentrations (EC50s) of 57 and 50 pM, respectively, and have favorable cytotoxicity profiles with 50% cytotoxic concentrations (CC50s) of 38 and 11 μM, respectively. The activity of GRL-001-15 against multi-PI-resistant HIV-1 variants was generally greater than that of GRL-003-15. The EC50of GRL-001-15 against an HIV-1 variant that was highly resistant to multiple PIs, including darunavir (DRV) (HIV-1DRVRP30), was 0.17 nM, and that of GRL-003-15 was 3.3 nM, while DRV was much less active, with an EC50of 216 nM. The emergence of HIV-1 variants resistant to GRL-001-15 and GRL-003-15 was significantly delayed compared to that of variants resistant to selected PIs, including DRV. Structural analyses of wild-type protease (PRWT) complexed with the novel PIs revealed that GRL-001-15’smeta-fluorine atom forms halogen bond interactions (2.9 and 3.0 Å) with Gly49 and Ile50, respectively, of the protease flap region and with Pro81′ (2.7 and 3.2 Å), which is located close to the protease active site, and that two fluorine atoms of GRL-142-13 form multiple halogen bond interactions with Gly49, Ile50, Pro81′, Ile82′, and Arg8′. In contrast, GRL-003-15 forms halogen bond interactions with Pro81′ alone, suggesting that the reduced antiviral activity of GRL-003-15 is due to the loss of the interactions with the flap region.

Mukaiyama Aldol Reaction Catalyzed by (Benz)imidazolium-Based Halogen Bond Donors

2020 ◽  
Author(s):  
Revannath L. Sutar ◽  
Nikita Erochok ◽  
Stefan Huber
Keyword(s):  
Halogen Bond ◽  
Aldol Reaction ◽  
Mukaiyama Aldol Reaction ◽  
Mukaiyama Aldol ◽  
Background Reaction ◽  
Strong Performance ◽  
The Stability ◽  
Elemental Iodine

A series of cationic monodentate and bidentate iodo(benz)­imidazolium-based halogen bond (XB) donors were employed as catalysts in a Mukaiyama aldol reaction. While 5 mol% of a monodentate variant showed noticeable activity, a <i>syn</i>-preorganized bidentate XB donor provided a strong performance even with 0.5 mol% loading. In contrast to the very active BAr<sup>F</sup><sub>4</sub> salts, PF<sub>6</sub> or OTf salts were either inactive or showed background reaction. Repetition experiments clearly ruled out a potential hidden catalysis by elemental iodine and demonstrated the stability of our catalyst over three consecutive cycles.

Recent Strategies for Carbon‐Halogen Bond Formation Using Nickel

2021 ◽  
Author(s):  
Mark Lautens ◽  
Austin D. Marchese ◽  
Timur Adrianov
Keyword(s):  
Halogen Bond ◽  
Bond Formation

scholarly journals Difluorocarbene enables to access 2-fluoroindoles from ortho-vinylanilines

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Jianke Su ◽  
Xinyuan Hu ◽  
Hua Huang ◽  
Yu Guo ◽  
Qiuling Song
Keyword(s):  
Fluorine Atom ◽  
High Efficiency ◽  
Addition Reaction ◽  
Bond Cleavage ◽  
Therapeutic Agents ◽  
Bioactive Molecules ◽  
General Strategy ◽  
Michael Addition Reaction ◽  
Fundamental Properties ◽  
Synthetic Approaches

Abstract2-Fluoroindoles as an important structural scaffold are widely existing in many bioactive or therapeutic agents. Despite their potential usefulness, efficient constructions of 2-fluoroindole derivatives are very sparce. The development of straightforward synthetic approaches to access 2-fluoroindoles is highly desirable for studying their fundamental properties and applications. Herein, we report an efficient and general strategy for the construction of 2-fluoroindoles in which a wide variety of 2-fluoroindoles were accessed with high efficiency and chemoselectivity. Instead of starting from indole skeletons, our strategy constructs indole scaffolds alongside the incorporation of fluorine atom on C2 position in a formal [4+1] cyclization from readily accessible ortho-vinylanilines and difluorocarbene. In our protocol, commercially accessible halodifluoroalkylative reagents provide one carbon and one fluorine atom by cleaving one C-N tertiary bond and forming one C-N bond and one C-C double bond with ortho-vinylanilines. Downstream transformations on 2-fluoroindoles lead to various valuable bioactive molecules which demonstrated significant synthetic advantages over previous reports. And mechanistic studies suggest that the reaction undergoes a cascade difluorocarbene-trapping and intramolecular Michael addition reaction followed by Csp3-F bond cleavage.

scholarly journals Design and Synthesis of Fluoro Analogues of Vitamin D

2021 ◽  
Vol 22 (15) ◽  
pp. 8191
Author(s):  
Fumihiro Kawagoe ◽  
Sayuri Mototani ◽  
Atsushi Kittaka
Keyword(s):  
Vitamin D ◽  
Vitamin D3 ◽  
Fluorine Atom ◽  
Chemical Properties ◽  
Molecular Structures ◽  
Physical And Chemical Properties ◽  
Design And Synthesis ◽  
Synthetic Methodologies ◽  
Physical And Chemical ◽  
And Chemical Properties

The discovery of a large variety of functions of vitamin D3 and its metabolites has led to the design and synthesis of a vast amount of vitamin D3 analogues in order to increase the potency and reduce toxicity. The introduction of highly electronegative fluorine atom(s) into vitamin D3 skeletons alters their physical and chemical properties. To date, many fluorinated vitamin D3 analogues have been designed and synthesized. This review summarizes the molecular structures of fluoro-containing vitamin D3 analogues and their synthetic methodologies.

Halogen bond-induced electrophilic aromatic halogenations

2021 ◽  
Author(s):  
Wanutcha Lorpaiboon ◽  
Pakorn Bovonsombat
Keyword(s):  
Halogen Bond

This review highlights the recent development of halogen bond-induced activations of N-halosuccinimides and N,N-dihalodimethylhydantoins in electrophilic aromatic halogenations.

scholarly journals Planar Tetracoordinate Fluorine Atoms

2021 ◽  
Author(s):  
Gabriela Castillo-Toraya ◽  
Mesias Orozco-Ic ◽  
Eugenia Dzib ◽  
Ximena Zarate ◽  
Filiberto Ortiz-Chi ◽  
...  
Keyword(s):  
Fluorine Atom

Unlike other atoms, a planar tetracoordinate fluorine atom is elusive. So far, there are no theoretical or experimental reports suggesting their existence. Herein, we introduce the first six combinations (FIn4+,...

scholarly journals The influence of secondary interactions on the [N‐I‐N]+ halogen bond

2021 ◽  
Author(s):  
Sofia Lindblad ◽  
Flóra Boróka Németh ◽  
Tamás Földes ◽  
Daniel von der Heiden ◽  
Herh G. Vang ◽  
...  
Keyword(s):  
Halogen Bond ◽  
Secondary Interactions
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