8-Aza-7-deazaguanine nucleosides and oligonucleotides with octadiynyl side chains: synthesis, functionalization by the azide-alkyne ‘click’ reaction and nucleobase specific fluorescence quenching of coumarin dye conjugates

2009 ◽  
Vol 7 (7) ◽  
pp. 1374 ◽  
Author(s):  
Frank Seela ◽  
Hai Xiong ◽  
Peter Leonard ◽  
Simone Budow
2019 ◽  
Vol 292 ◽  
pp. 111419 ◽  
Author(s):  
V.V. Koppal ◽  
P.G. Patil ◽  
Raveendra M. Melavanki ◽  
Raviraj A. Kusanur ◽  
Ushie Onumashi Afi ◽  
...  

1992 ◽  
Vol 282 (1) ◽  
pp. 75-80 ◽  
Author(s):  
E Kahana ◽  
J C Pinder ◽  
K S Smith ◽  
W B Gratzer

The intrinsic fluorescence of spectrin is strongly quenched by low concentrations of 2-bromostearate. This results from binding at a series of hydrophobic sites. Analysis of dynamic fluorescence quenching by acrylamide, iodide and caesium ions, separately and in conjunction with 2-bromostearate, leads to the conclusion that most of the tryptophan side-chains are exposed to solvent. The sites at which the fatty-acid-quenched tryptophans are located apparently interact with the lipid bilayer in the cell, as judged by quenching by bromostearate dissolved in the lipid phase. A minor proportion of the side-chains in native spectrin give rise to sharp proton magnetic resonance signals, indicative of segmental mobility; these chain elements contain some tryptophan residues, as revealed by weak downfield signals from the heterocyclic ring protons. These signals are not appreciably perturbed by stearic acid or by phosphatidylserine liposomes, suggesting that the hydrophobic binding sites are not in mobile chain elements. By contrast with a series of globular proteins which, with the exception of serum albumins, show little or no quenching by 2-bromostearate, the peripheral red cell membrane skeletal proteins ankyrin (and its spectrin-binding domain), protein 4.1 and (to a lesser extent) actin show evidence of a high affinity for the hydrophobic ligand and may, like spectrin, interact directly with the bilayer in situ.


Luminescence ◽  
2018 ◽  
Vol 33 (5) ◽  
pp. 933-940 ◽  
Author(s):  
P. Bhavya ◽  
Raveendra Melavanki ◽  
Raviraj Kusanur ◽  
Kalpana Sharma ◽  
V. T. Muttannavar ◽  
...  

Author(s):  
Ashok H. Sidarai ◽  
Vani R. Desai ◽  
Shirajahammad M. Hunagund ◽  
Mahantesha Basanagouda ◽  
Jagadish S. Kadadevarmath

The fluorescence quenching of coumarin dye namely 4-(2,6-dibromo-4-methyl-phenoxymethyl)-benzo[h]chromen-2-one [DMB] has been studied by aniline, in a different solvent mixture of benzene (BN) and acetonitrile (AN) at room temperature. The quenching is found to be appreciable and shows positive deviation from linearity in the Stern-Volmer (S-V) plots for all the solvent mixtures. The various rate parameters responsible for fluorescence quenching have been determined using a sphere of action static quenching model and finite sink approximation model. The magnitudes of these rate parameters indicate that positive deviation in the S-V plot is due to both static and dynamic quenching processes.


2015 ◽  
Vol 1088 ◽  
pp. 286-289
Author(s):  
Yuan Cui ◽  
Jing Peng Zhang ◽  
Wei Zhang ◽  
Qian Duan

"Click chemistry" was used in this paper to get a novel hyaluronic acid (HA) hydrogel by modified HA molecules' side chains with azide and alkynyl groups to perform "Click" reaction. The HA hydrogel can be achieved "in situ" injection gel. The properties of the HA hydrogel can be controlled by controlling the amount of alkynyl and azide groups on side chains to achieve controllable HA hydrogel by HA molecular design. The reactant, product and hydrogel were characterized by 1H NMR, FTIR and morphology observation to determine the processes of reaction and can hydrogel formation.


ChemBioChem ◽  
2008 ◽  
Vol 9 (14) ◽  
pp. 2305-2316 ◽  
Author(s):  
Venkata Ramana Sirivolu ◽  
Padmaja Chittepu ◽  
Frank Seela

2012 ◽  
Vol 116 (11) ◽  
pp. 2819-2825 ◽  
Author(s):  
Thomas Gelot ◽  
Patricia Tourón-Touceda ◽  
Olivier Crégut ◽  
Jérémie Léonard ◽  
Stefan Haacke

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