Palladium(0) catalyzed regioselective carbonyl propargylation across tetragonal tin(ii) oxide via redox transmetallationElectronic supplementary information (ESI) available: general method and experimental procedure and spectroscopic data for compounds 3–10. See http://www.rsc.org/suppdata/cc/b2/b211555g/

Novel multi-chalcogen ring systems with three different chalcogen atoms: synthesis, structure and redox property of five-membered trichalcogenaheterocyclesElectronic supplementary information (ESI) available: satisfactory characterizing data for all the new compounds. Typical experimental procedure, physical and spectroscopic data of all the new compounds and ORTEP view of 2d. See http://www.rsc.org/suppdata/cc/b2/b205445k/

Chemical Communications ◽

10.1039/b205445k ◽

2002 ◽

pp. 1918-1919 ◽

Cited By ~ 13

Author(s):

Satoshi Ogawa ◽

Satoko Yoshimura ◽

Noriyoshi Nagahora ◽

Yasushi Kawai ◽

Yuji Mikata ◽

...

Keyword(s):

Spectroscopic Data ◽

Redox Property ◽

Supplementary Information ◽

Experimental Procedure ◽

Ring Systems ◽

New Compounds

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A rationally designed novel receptor for probing cooperative interaction between metal ions and bivalent tryptophan side chain in solutionElectronic supplementary information (ESI) available: General experimental procedure, synthesis and characterization of EW2, and spectroscopic data. See http://www.rsc.org/suppdata/cc/b3/b310543a/

Chemical Communications ◽

10.1039/b310543a ◽

2003 ◽

pp. 2884 ◽

Cited By ~ 41

Author(s):

Yitong Li ◽

Chi Ming Yang

Keyword(s):

Metal Ions ◽

Spectroscopic Data ◽

Cooperative Interaction ◽

Supplementary Information ◽

Side Chain ◽

Synthesis And Characterization ◽

Experimental Procedure ◽

General Experimental Procedure

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Synthesis of (R)-2-methyl-4-deoxy and (R)-2-methyl-4,5-dideoxy analogues of 6-phosphogluconate as potential inhibitors of 6-phosphogluconate dehydrogenaseElectronic supplementary information (ESI) available: experimental procedure and spectroscopic data (1H NMR, 13C NMR, DEPT) for compounds 2, 12, 13, 14, 15 and 21b and the previous synthetic approach tried for the synthesis of (2R)-2-methyl-4,5-dideoxy analogues. See http://www.rsc.org/suppdata/ob/b2/b210606j/

Organic & Biomolecular Chemistry ◽

10.1039/b210606j ◽

2003 ◽

Vol 1 (3) ◽

pp. 552-559 ◽

Cited By ~ 7

Author(s):

Christophe Dardonville ◽

Ian H. Gilbert

Keyword(s):

1H Nmr ◽

13C Nmr ◽

Spectroscopic Data ◽

Supplementary Information ◽

Synthetic Approach ◽

Experimental Procedure ◽

Potential Inhibitors

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A novel intramolecular through-space interaction between F and CN: a strategy for the conformational control of an acyclic systemElectronic supplementary information (ESI) available: experimental procedure for the syntheses of syn- and anti-1 and 2, spectroscopic data for all compounds, a procedure for the stereoselective protonation of 2, full crystallographic data of syn- and anti-1 and anti-2. See http://www.rsc.org/suppdata/cc/b1/b107213g/

Chemical Communications ◽

10.1039/b107213g ◽

2001 ◽

pp. 2394-2395 ◽

Cited By ~ 12

Author(s):

Kiyoharu Nishide ◽

Yuri Hagimoto ◽

Hiroaki Hasegawa ◽

Motoo Shiro ◽

Manabu Node

Keyword(s):

Spectroscopic Data ◽

Crystallographic Data ◽

Supplementary Information ◽

Conformational Control ◽

Experimental Procedure

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Solventless syntheses of pyrazole derivativesElectronic supplementary information (ESI) available: analytical and spectroscopic data. See http://www.rsc.org/suppdata/gc/b3/b312833d/

Green Chemistry ◽

10.1039/b312833d ◽

2004 ◽

Vol 6 (2) ◽

pp. 90 ◽

Cited By ~ 108

Author(s):

Zhong-Xia Wang ◽

Hua-Li Qin

Keyword(s):

Spectroscopic Data ◽

Supplementary Information

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Palladium-catalyzed cyclization of alkenyl β-keto esters in the presence of chlorotrimethylsilaneElectronic supplementary information (ESI) available: experimental procedures, analytical and spectroscopic data for new compounds and cyclohexanones. See http://www.rsc.org/suppdata/cc/b1/b111644d/

Chemical Communications ◽

10.1039/b111644d ◽

2002 ◽

pp. 650-651 ◽

Cited By ~ 32

Author(s):

Tao Pei ◽

Ross A. Widenhoefer

Keyword(s):

Spectroscopic Data ◽

Supplementary Information ◽

Keto Esters ◽

Palladium Catalyzed ◽

New Compounds

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Configurational assignment of α-chiral carboxylic acids by complexation to dimeric Zn–porphyrin: host–guest structure, chiral recognition and circular dichroismElectronic supplementary information (ESI) available: spectroscopic data for compounds 1–7/2 and 3–7/2 to 6–7/2; UV-Vis spectra and binding curves for titration of 2 with 1–8; Job plot for 1–8/2; computational and experimental sections. See http://www.rsc.org/suppdata/cc/b2/b204554k/

Chemical Communications ◽

10.1039/b204554k ◽

2002 ◽

pp. 1590-1591 ◽

Cited By ~ 45

Author(s):

Gloria Proni ◽

Gennaro Pescitelli ◽

Xuefei Huang ◽

Nazia Q. Quraishi ◽

Koji Nakanishi ◽

...

Keyword(s):

Carboxylic Acids ◽

Spectroscopic Data ◽

Chiral Recognition ◽

Supplementary Information ◽

Configurational Assignment ◽

Binding Curves

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Expression of the prohelicity of bis-cyclomanganated 2,3-diphenylquinoxaline through reactions with diaryldiazomethanesElectronic supplementary information (ESI) available: preparation procedure and spectroscopic data for 1b–d, crystal data for polymer 1e. See http://www.rsc.org/suppdata/cc/b1/b111570g

Chemical Communications ◽

10.1039/b111570g ◽

2002 ◽

pp. 638-639 ◽

Cited By ~ 11

Author(s):

André de Cian ◽

Jean-Pierre Djukic ◽

Jean Fischer ◽

Michel Pfeffer ◽

Karl Heinz Dötz

Keyword(s):

Spectroscopic Data ◽

Supplementary Information ◽

Preparation Procedure ◽

Crystal Data

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Bond energy M–C/H–C correlations: dual theoretical and experimental approach to the sensitivity of M–C bond strength to substituentsElectronic supplementary information (ESI) available: methods of calculation; Fig. S1: Comparison of calculated and experimental C–H bond dissociation energies for organic molecules; Table S1, comparison of calculated and experimental CO-stretching frequencies; Table S2, total energies, BDE for Re–C and H–C; Table S3, NPA charges q(C) and q(aryl) for the organic fragments C6H6–nFn and the rhenium complexes; preparation and spectroscopic data for Re(η5-C5Me5)(CO)2(2,6-C6H3F2)H. See http://www.rsc.org/suppdata/cc/b2/b210036n/

Chemical Communications ◽

10.1039/b210036n ◽

2003 ◽

pp. 490-491 ◽

Cited By ~ 59

Author(s):

Eric Clot ◽

Maria Besora ◽

Feliu Maseras ◽

Claire Mégret ◽

Odile Eisenstein ◽

...

Keyword(s):

Bond Strength ◽

Bond Energy ◽

Spectroscopic Data ◽

Organic Molecules ◽

Experimental Approach ◽

Supplementary Information ◽

Bond Dissociation Energies ◽

Dissociation Energies ◽

Methods Of Calculation ◽

Total Energies

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RTNduals: an R/Bioconductor package for analysis of co-regulation and inference of dual regulons

Bioinformatics ◽

10.1093/bioinformatics/btz534 ◽

2019 ◽

Vol 35 (24) ◽

pp. 5357-5358

Author(s):

Vinicius S Chagas ◽

Clarice S Groeneveld ◽

Kelin G Oliveira ◽

Sheyla Trefflich ◽

Rodrigo C de Almeida ◽

...

Keyword(s):

Regulatory Networks ◽

Target Genes ◽

Supplementary Information ◽

Transcriptional Networks ◽

Bioconductor Package ◽

Multiple Target ◽

R Language ◽

Downstream Effects ◽

Bioconductor Project ◽

General Method

Abstract Motivation Transcription factors (TFs) are key regulators of gene expression, and can activate or repress multiple target genes, forming regulatory units, or regulons. Understanding downstream effects of these regulators includes evaluating how TFs cooperate or compete within regulatory networks. Here we present RTNduals, an R/Bioconductor package that implements a general method for analyzing pairs of regulons. Results RTNduals identifies a dual regulon when the number of targets shared between a pair of regulators is statistically significant. The package extends the RTN (Reconstruction of Transcriptional Networks) package, and uses RTN transcriptional networks to identify significant co-regulatory associations between regulons. The Supplementary Information reports two case studies for TFs using the METABRIC and TCGA breast cancer cohorts. Availability and implementation RTNduals is written in the R language, and is available from the Bioconductor project at http://bioconductor.org/packages/RTNduals/. Supplementary information Supplementary data are available at Bioinformatics online.

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