scholarly journals Transcriptomic insight into terpenoid and carbazole alkaloid biosynthesis, and functional characterization of two terpene synthases in curry tree (Murraya koenigii)

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Seema Meena ◽  
Sarma Rajeev Kumar ◽  
Varun Dwivedi ◽  
Anup Kumar Singh ◽  
Chandan S. Chanotiya ◽  
...  
Keyword(s):  
Functional Characterization ◽  
Alkaloid Biosynthesis ◽  
Murraya Koenigii ◽  
Terpene Synthases ◽  
Insight Into

Functional characterization of terpene synthases and chemotypic variation in three lavender species of section Stoechas

2014 ◽  
Vol 153 (1) ◽  
pp. 43-57 ◽  
Author(s):  
Tarek Benabdelkader ◽  
Yann Guitton ◽  
Bernard Pasquier ◽  
Jean Louis Magnard ◽  
Frédéric Jullien ◽  
...  
Keyword(s):  
Functional Characterization ◽  
Terpene Synthases

scholarly journals Insight into Biochemical Characterization of Plant Sesquiterpene Synthases

2016 ◽  
Vol 11s1 ◽  
pp. ACI.S40292
Author(s):  
Tom Manczak ◽  
Henrik Toft Simonsen
Keyword(s):  
Kinetic Parameters ◽  
Biochemical Characterization ◽  
Radioactive Isotopes ◽  
Published Data ◽  
Enzymatic Characterization ◽  
Turnover Number ◽  
Terpene Synthases ◽  
Thapsia Garganica ◽  
Insight Into

A fast and reproducible protocol was established for enzymatic characterization of plant sesquiterpene synthases that can incorporate radioactivity in their products. The method utilizes the 96-well format in conjunction with cluster tubes and enables processing of >200 samples a day. Along with reduced reagent usage, it allows further reduction in the use of radioactive isotopes and flammable organic solvents. The sesquiterpene synthases previously characterized were expressed in yeast, and the plant-derived Thapsia garganica kunzeaol synthase TgTPS2 was tested in this method. KM for TgTPS2 was found to be 0.55 μM; the turnover number, kcat, was found to be 0.29 s−1, kcat for TgTPS2 is in agreement with that of terpene synthases of other plants, and kcat/ KM was found to be 0.53 s−1 μM−1 for TgTPS2. The kinetic parameters were in agreement with previously published data.

scholarly journals Structural and functional characterization of mouse U7 small nuclear RNA active in 3' processing of histone pre-mRNA.

1988 ◽  
Vol 8 (4) ◽  
pp. 1518-1524 ◽  
Author(s):  
D Soldati ◽  
D Schümperli
Keyword(s):  
Sea Urchin ◽  
Functional Characterization ◽  
Rnase H ◽  
Primer Extension ◽  
Small Nuclear Rna ◽  
Nuclear Rna ◽  
Processing Signal ◽  
Insight Into

Oligonucleotides derived from the spacer element of the histone RNA 3' processing signal were used to characterize mouse U7 small nuclear RNA (snRNA), i.e., the snRNA component active in 3' processing of histone pre-mRNA. Under RNase H conditions, such oligonucleotides inhibited the processing reaction, indicating the formation of a DNA-RNA hybrid with a functional ribonucleoprotein component. Moreover, these oligonucleotides hybridized to a single nuclear RNA species of approximately 65 nucleotides. The sequence of this RNA was determined by primer extension experiments and was found to bear several structural similarities with sea urchin U7 snRNA. The comparison of mouse and sea urchin U7 snRNA structures yields some further insight into the mechanism of histone RNA 3' processing.

Phylogenetic analysis of fungal aquaporins provides insight into their possible role in water transport of mycorrhizal associations

Botany ◽  
2013 ◽  
Vol 91 (8) ◽  
pp. 495-504 ◽  
Author(s):  
Hao Xu ◽  
Janice E.K. Cooke ◽  
Janusz J. Zwiazek
Keyword(s):  
Water Transport ◽  
Mycorrhizal Fungi ◽  
Functional Characterization ◽  
Arbuscular Mycorrhizal ◽  
Gene Families ◽  
Fungal Species ◽  
Comparative Genomic ◽  
Mycorrhizal Associations ◽  
Insight Into

In mycorrhizal associations, water transport properties of the fungal hyphae may have a profound effect on water transport of the host plant. The importance of aquaporins, water-transporting members of the major intrinsic protein (MIP) family, in facilitating water transport has been widely acknowledged and extensively studied in plants. However, until recently, relatively little was known about the structure, function, and regulation of fungal MIPs. The rapid increase in the number of sequenced fungal genomes, including Laccaria bicolor and other mycorrhizal fungi, has enabled functional and comparative genomic investigations to delineate the role that fungal MIPs play in mycorrhizal-facilitated plant water transport. Phylogenic analysis of 229 fungal MIPs from 88 species revealed that MIPs of mycorrhizal fungal species fall into four clusters delineated by functionally characterized fungal MIPs: the orthodox aquaporins, the aquaglyceroporins, the facultative fungal aquaporins, and the X intrinsic proteins. This comparative genomics analysis, together with in silico structural characterization of predicted MIPs and recently published functional characterization of MIPs from a small number of ectomycorrhizal and arbuscular mycorrhizal species, provide new insight into MIP gene families of mycorrhizal fungi and possible roles for fungal aquaporins in water relations of mycorrhizal plant–fungus symbioses.

scholarly journals Discovery and characterization of Hv1-type proton channels in reef-building corals.

2021 ◽  
Author(s):  
Gisela Rangel-Tescas ◽  
Cecilia Cervantes ◽  
Miguel A Cervantes-Rocha ◽  
Esteban Suarez-Delgado ◽  
Anastazia T Banaszak ◽  
...  
Keyword(s):  
Voltage Dependence ◽  
Ph Regulation ◽  
Functional Characterization ◽  
Gene Encoding ◽  
Proton Channels ◽  
Gating Model ◽  
Mechanistic Insight ◽  
Voltage Dependent ◽  
Insight Into

Voltage-dependent proton-permeable channels are membrane proteins mediating a number of important physiological functions. Here we report the presence of a gene encoding for Hv1 voltage-dependent, proton-permeable channels in two species of reef-building corals. We performed a characterization of their biophysical properties and found that these channels are fast-activating and modulated by the pH gradient in a manner that makes them interesting models for studying these processes more easily. We have also developed an allosteric gating model that provides mechanistic insight into the modulation of voltage-dependence by protons. This work also represents the first functional characterization of any ion channel in scleractinian corals. We discuss the implications of the presence of these channels in the membranes of coral cells in the calcification and pH regulation processes and possible consequences of ocean acidification related to the function of these channels.

scholarly journals A metabolic regulon reveals early and late acting enzymes in neuroactive Lycopodium alkaloid biosynthesis

2021 ◽  
Vol 118 (24) ◽  
pp. e2102949118
Author(s):  
Ryan S. Nett ◽  
Yaereen Dho ◽  
Yun-Yee Low ◽  
Elizabeth S. Sattely
Keyword(s):  
Functional Characterization ◽  
Huperzine A ◽  
Piperidine Ring ◽  
Ring Cleavage ◽  
Chemical Transformations ◽  
Alkaloid Biosynthesis ◽  
Type Iii Polyketide Synthase ◽  
Type Iii ◽  
Lycopodium Alkaloids ◽  
Insight Into

Plants synthesize many diverse small molecules that affect function of the mammalian central nervous system, making them crucial sources of therapeutics for neurological disorders. A notable portion of neuroactive phytochemicals are lysine-derived alkaloids, but the mechanisms by which plants produce these compounds have remained largely unexplored. To better understand how plants synthesize these metabolites, we focused on biosynthesis of the Lycopodium alkaloids that are produced by club mosses, a clade of plants used traditionally as herbal medicines. Hundreds of Lycopodium alkaloids have been described, including huperzine A (HupA), an acetylcholine esterase inhibitor that has generated interest as a treatment for the symptoms of Alzheimer’s disease. Through combined metabolomic profiling and transcriptomics, we have identified a developmentally controlled set of biosynthetic genes, or potential regulon, for the Lycopodium alkaloids. The discovery of this putative regulon facilitated the biosynthetic reconstitution and functional characterization of six enzymes that act in the initiation and conclusion of HupA biosynthesis. This includes a type III polyketide synthase that catalyzes a crucial imine-polyketide condensation, as well as three Fe(II)/2-oxoglutarate–dependent dioxygenase (2OGD) enzymes that catalyze transformations (pyridone ring-forming desaturation, piperidine ring cleavage, and redox-neutral isomerization) within downstream HupA biosynthesis. Our results expand the diversity of known chemical transformations catalyzed by 2OGDs and provide mechanistic insight into the function of noncanonical type III PKS enzymes that generate plant alkaloid scaffolds. These data offer insight into the chemical logic of Lys-derived alkaloid biosynthesis and demonstrate the tightly coordinated coexpression of secondary metabolic genes for the biosynthesis of medicinal alkaloids.

Combining transcriptomics-based and proteomics-based approaches for functional characterization of terpene synthases of “Arnica da Serra” (Asteraceae)

Planta Medica ◽  
2013 ◽  
Vol 79 (13) ◽  
Author(s):  
DP Pavarini ◽  
LP Oliveira ◽  
LM Pereira ◽  
AP Natsui ◽  
O Spring ◽  
...  
Keyword(s):  
Functional Characterization ◽  
Terpene Synthases

Urine Proteomics Profiling and Functional Characterization of Knee Osteoarthritis Using iTRAQ Technology

2019 ◽  
Vol 51 (11) ◽  
pp. 735-740 ◽  
Author(s):  
Ke Xiao ◽  
Lingjia Yu ◽  
Lisi Zhu ◽  
Zhihong Wu ◽  
Xisheng Weng ◽  
...  
Keyword(s):  
Functional Characterization ◽  
Joint Function ◽  
Urine Protein ◽  
Western Blots ◽  
Urine Proteomics ◽  
Protein Levels ◽  
Mass Spectrometry Technology ◽  
Proteome Profile ◽  
Insight Into

AbstractOsteoarthritis (OA) is a degenerative chronic disease affecting the whole joint structures. With the increment in life expectancy and aging population, OA has become one of the largest socioeconomic burdens, associated with pain and loss of joint function. However, early laboratory tests of OA are still lacking. Therefore, new diagnostic tests for this disease are urgently needed. In this study, to gain an insight into the pathogenesis and the potential biomarkers of OA, we implemented a comparative urine proteomics study on OA patients and health people using iTRAQ-based mass spectrometry technology. Western blotting was used to validate the relative changes in urine protein levels for four of the identified proteins. We constructed a comprehensive urine proteome profile of the OA patients and identified 102 proteins differently changed in abundance. Forty-six proteins were upregulated and 56 proteins were significantly downregulated in OA patients. Furthermore, the proteins, COL-4, MMP9, adiponectin, and BBOX1 were validated through Western blots, which can serve as valuable candidate biomarkers and help to illustrate the pathogenesis of OA. These findings may provide clues for promising biomarkers for the early diagnosis and also offer a theoretical basis for the early treatment of OA.

scholarly journals Functional characterization of tlmH in Streptoalloteichus hindustanus E465-94 ATCC 31158 unveiling new insight into tallysomycinbiosynthesis and affording a novel bleomycin analog

2010 ◽  
Vol 6 (2) ◽  
pp. 349-356 ◽  
Author(s):  
Meifeng Tao ◽  
Liyan Wang ◽  
Evelyn Wendt-Pienkowski ◽  
Ningning Zhang ◽  
Dong Yang ◽  
...  
Keyword(s):  
Functional Characterization ◽  
Insight Into
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