Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans

Arnab Mukhopadhyay; Bart Deplancke; Albertha J M Walhout; Heidi A Tissenbaum

doi:10.1038/nprot.2008.38

Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans

Nature Protocols ◽

10.1038/nprot.2008.38 ◽

2008 ◽

Vol 3 (4) ◽

pp. 698-709 ◽

Cited By ~ 154

Author(s):

Arnab Mukhopadhyay ◽

Bart Deplancke ◽

Albertha J M Walhout ◽

Heidi A Tissenbaum

Keyword(s):

Transcription Factor ◽

Caenorhabditis Elegans ◽

Real Time ◽

Real Time Pcr ◽

Chromatin Immunoprecipitation ◽

Transcription Factor Binding ◽

Quantitative Real Time Pcr ◽

Factor Binding

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Chromatin Immunoprecipitation and Multiplex Sequencing (ChIP-Seq) to Identify Global Transcription Factor Binding Sites in the Nematode Caenorhabditis Elegans

Methods in Enzymology - Laboratory Methods in Enzymology: Protein Part B ◽

10.1016/b978-0-12-420120-0.00007-4 ◽

2014 ◽

pp. 89-111 ◽

Cited By ~ 6

Author(s):

Cathleen M. Brdlik ◽

Wei Niu ◽

Michael Snyder

Keyword(s):

Transcription Factor ◽

Caenorhabditis Elegans ◽

Chromatin Immunoprecipitation ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Nematode Caenorhabditis Elegans ◽

Factor Binding ◽

Multiplex Sequencing

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Relative Efficiency of Transcription Factor Binding to Allelic Variants of Regulatory Regions of Human Genes in Immunoprecipitation and Real-Time PCR

Molecular Biology ◽

10.1134/s0026893319030117 ◽

2019 ◽

Vol 53 (3) ◽

pp. 346-353

Author(s):

N. A. Mitkin ◽

K.V. Korneev ◽

A. M. Gorbacheva ◽

D. V. Kuprash

Keyword(s):

Transcription Factor ◽

Real Time ◽

Real Time Pcr ◽

Relative Efficiency ◽

Transcription Factor Binding ◽

Allelic Variants ◽

Regulatory Regions ◽

Factor Binding ◽

Human Genes

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Transcription Factor Binding Studies in CD4+ T Cells: siRNA Transfection, Chromatin Immunoprecipitation, and Liquid Luminescent DNA Precipitation Assay

Methods in Molecular Biology - Th9 Cells ◽

10.1007/978-1-4939-6877-0_13 ◽

2017 ◽

pp. 167-177

Author(s):

Etienne Humblin ◽

François Ghiringhelli ◽

Frédérique Végran

Keyword(s):

T Cells ◽

Transcription Factor ◽

Chromatin Immunoprecipitation ◽

Cd4 T Cells ◽

Transcription Factor Binding ◽

Sirna Transfection ◽

Binding Studies ◽

Factor Binding ◽

Dna Precipitation

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Chromatin Immunoprecipitation and Quantitative Real-Time PCR to Assess Binding of a Protein of Interest to Identified Predicted Binding Sites Within a Promoter

Methods in Molecular Biology - Mammalian Synthetic Promoters ◽

10.1007/978-1-4939-7223-4_3 ◽

2017 ◽

pp. 23-32

Author(s):

Jordan E. Read

Keyword(s):

Real Time ◽

Real Time Pcr ◽

Chromatin Immunoprecipitation ◽

Binding Sites ◽

Quantitative Real Time Pcr

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Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila

Methods in Molecular Biology - Drosophila ◽

10.1007/978-1-4939-6371-3_16 ◽

2016 ◽

pp. 263-277 ◽

Cited By ~ 6

Author(s):

Yad Ghavi-Helm ◽

Bingqing Zhao ◽

Eileen E. M. Furlong

Keyword(s):

Transcription Factor ◽

Histone Modifications ◽

Chromatin Immunoprecipitation ◽

Transcription Factor Binding ◽

Factor Binding

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Use of chromatin immunoprecipitation (chip) to detect transcription factor binding to highly homologous promoters in chromatin isolated from unstimulated and activated primary human B cells

Biological Procedures Online ◽

10.1251/bpo117 ◽

2006 ◽

Vol 8 (1) ◽

pp. 44-54 ◽

Cited By ~ 6

Author(s):

Rebecca L. Dryer ◽

Lori R. Covey

Keyword(s):

Transcription Factor ◽

B Cells ◽

Chromatin Immunoprecipitation ◽

Transcription Factor Binding ◽

Factor Binding ◽

Human B Cells

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Site-specific chromatin immunoprecipitation: a selective method to individually analyze neighboring transcription factor binding sites in vivo

BMC Research Notes ◽

10.1186/1756-0500-5-109 ◽

2012 ◽

Vol 5 (1) ◽

Cited By ~ 5

Author(s):

Ronaldo Schuch ◽

Konstantin Agelopoulos ◽

Anna Neumann ◽

Burkhard Brandt ◽

Horst Bürger ◽

...

Keyword(s):

Transcription Factor ◽

Chromatin Immunoprecipitation ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Site Specific ◽

Selective Method ◽

Factor Binding

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Real-time Analysis of Transcription Factor Binding, Transcription, Translation, and Turnover to Display Global Events During Cellular Activation

Journal of Visualized Experiments ◽

10.3791/56752 ◽

2018 ◽

Author(s):

Kathrin Davari ◽

Johannes Lichti ◽

Caroline C. Friedel ◽

Elke Glasmacher

Keyword(s):

Transcription Factor ◽

Real Time ◽

Transcription Factor Binding ◽

Time Analysis ◽

Cellular Activation ◽

Factor Binding ◽

Real Time Analysis ◽

Global Events

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Chromatin immunoprecipitation: a tool for studying histone acetylation and transcription factor binding

Methods ◽

10.1016/s1046-2023(03)00089-6 ◽

2003 ◽

Vol 31 (1) ◽

pp. 67-75 ◽

Cited By ~ 112

Author(s):

V Spencer

Keyword(s):

Transcription Factor ◽

Histone Acetylation ◽

Chromatin Immunoprecipitation ◽

Transcription Factor Binding ◽

Factor Binding

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Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters

Nucleic Acids Research ◽

10.1093/nar/gkt858 ◽

2013 ◽

Vol 42 (1) ◽

pp. 153-162 ◽

Cited By ~ 7

Author(s):

Juan I. Fuxman Bass ◽

Alex M. Tamburino ◽

Akihiro Mori ◽

Nathan Beittel ◽

Matthew T. Weirauch ◽

...

Keyword(s):

Transcription Factor ◽

Caenorhabditis Elegans ◽

Transcription Factor Binding ◽

Gene Promoters ◽

Factor Binding

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