Amino acid geochronology of individual foraminifer (Pulleniatina obliquiloculata) tests, north Queensland margin, Australia: A new approach to correlating and dating Quaternary tropical marine sediment cores

2004 ◽  
Vol 19 (4) ◽  
pp. n/a-n/a ◽  
Author(s):  
Paul J. Hearty ◽  
Michael J. O'Leary ◽  
Darrell S. Kaufman ◽  
Michael C. Page ◽  
Jordon Bright
Keyword(s):  
Amino Acid ◽  
Marine Sediment ◽  
Sediment Cores ◽  
New Approach

scholarly journals A spectral approach to estimating the timescale-dependent uncertainty of paleoclimate records – Part 2: Application and interpretation

2021 ◽  
Vol 17 (2) ◽  
pp. 825-841
Author(s):  
Andrew M. Dolman ◽  
Torben Kunz ◽  
Jeroen Groeneveld ◽  
Thomas Laepple
Keyword(s):  
Error Estimates ◽  
Marine Sediment ◽  
Sediment Cores ◽  
Theoretical Framework ◽  
New Approach ◽  
Past Climate ◽  
Proxy Records ◽  
Spatial Coverage ◽  
Paleoclimate Records ◽  
Earth’S Climate

Abstract. Proxy climate records are an invaluable source of information about the earth's climate prior to the instrumental record. The temporal and spatial coverage of records continues to increase; however, these records of past climate are associated with significant uncertainties due to non-climate processes that influence the recorded and measured proxy values. Generally, these uncertainties are timescale dependent and correlated in time. Accounting for structure in the errors is essential for providing realistic error estimates for smoothed or stacked records, detecting anomalies, and identifying trends, but this structure is seldom accounted for. In the first of these companion articles, we outlined a theoretical framework for handling proxy uncertainties by deriving the power spectrum of proxy error components from which it is possible to obtain timescale-dependent error estimates. Here in Part 2, we demonstrate the practical application of this theoretical framework using the example of marine sediment cores. We consider how to obtain estimates for the required parameters and give examples of the application of this approach for typical marine sediment proxy records. Our new approach of estimating and providing timescale-dependent proxy errors overcomes the limitations of simplistic single-value error estimates. We aim to provide the conceptual basis for a more quantitative use of paleo-records for applications such as model–data comparison, regional and global synthesis of past climate states, and data assimilation.

scholarly journals Estimating the timescale-dependent uncertainty of paleoclimate records – a spectral approach. Part II: Application and interpretation

2020 ◽  
Author(s):  
Andrew M. Dolman ◽  
Torben Kunz ◽  
Jeroen Groeneveld ◽  
Thomas Laepple
Keyword(s):  
Error Estimates ◽  
Marine Sediment ◽  
Sediment Cores ◽  
Theoretical Framework ◽  
New Approach ◽  
Past Climate ◽  
Proxy Records ◽  
Spatial Coverage ◽  
Paleoclimate Records ◽  
Earth’S Climate

Abstract. Proxy climate records are an invaluable source of information about the earth’s climate prior to the instrumental record. The temporal- and spatial-coverage of records continues to increase, however, these records of past climate are associated with significant uncertainties due to non-climate processes that influence the recorded and measured proxy values. Generally, these uncertainties are timescale-dependent and correlated in time. Accounting for structure in the errors is essential to providing realistic error estimates for smoothed or stacked records, detection of anomalies and identifying trend, but this structure is seldom accounted for. In the first of these companion articles we outlined a theoretical framework for handling proxy uncertainties by deriving the power spectrum of proxy error components from which it is possible to obtain timescale-dependent error estimates. Here in part II, we demonstrate the practical application of this theoretical framework using the example of marine sediment cores. We consider how to obtain estimates for the required parameters and give examples of the application of this approach for typical marine sediment proxy records. Our new approach of estimating and providing timescale-dependent proxy errors overcomes the limitations of simplistic single value error estimates. We aim to provide the conceptual basis for a more quantitative use of paleo-records for applications such as model-data comparison, regional and global synthesis of past climate states and data assimilation.

scholarly journals Environmental DNA preserved in marine sediment for detecting jellyfish blooms after a tsunami

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Mizuki Ogata ◽  
Reiji Masuda ◽  
Hiroya Harino ◽  
Masayuki K. Sakata ◽  
Makoto Hatakeyama ◽  
...  
Keyword(s):  
Marine Sediment ◽  
Oil Spills ◽  
Sediment Cores ◽  
Environmental Dna ◽  
Target Species ◽  
Tank Experiment ◽  
Polycyclic Aromatic ◽  
Flow Through ◽  
High Concentrations ◽  
One Year

AbstractEnvironmental DNA (eDNA) can be a powerful tool for detecting the distribution and abundance of target species. This study aimed to test the longevity of eDNA in marine sediment through a tank experiment and to use this information to reconstruct past faunal occurrence. In the tank experiment, juvenile jack mackerel (Trachurus japonicus) were kept in flow-through tanks with marine sediment for two weeks. Water and sediment samples from the tanks were collected after the removal of fish. In the field trial, sediment cores were collected in Moune Bay, northeast Japan, where unusual blooms of jellyfish (Aurelia sp.) occurred after a tsunami. The samples were analyzed by layers to detect the eDNA of jellyfish. The tank experiment revealed that after fish were removed, eDNA was not present in the water the next day, or subsequently, whereas eDNA was detectable in the sediment for 12 months. In the sediment core samples, jellyfish eDNA was detected at high concentrations above the layer with the highest content of polycyclic aromatic hydrocarbons, reflecting tsunami-induced oil spills. Thus, marine sediment eDNA preserves a record of target species for at least one year and can be used to reconstruct past faunal occurrence.

scholarly journals Avoided motifs: short amino acid strings missing from protein datasets

2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Pablo Mier ◽  
Miguel A. Andrade-Navarro
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Protein Function ◽  
Large Protein ◽  
New Approach ◽  
Cellular Context ◽  
Human Proteins ◽  
Context Specific ◽  
Protein Datasets

Abstract According to the amino acid composition of natural proteins, it could be expected that all possible sequences of three or four amino acids will occur at least once in large protein datasets purely by chance. However, in some species or cellular context, specific short amino acid motifs are missing due to unknown reasons. We describe these as Avoided Motifs, short amino acid combinations missing from biological sequences. Here we identify 209 human and 154 bacterial Avoided Motifs of length four amino acids, and discuss their possible functionality according to their presence in other species. Furthermore, we determine two Avoided Motifs of length three amino acids in human proteins specifically located in the cytoplasm, and two more in secreted proteins. Our results support the hypothesis that the characterization of Avoided Motifs in particular contexts can provide us with information about functional motifs, pointing to a new approach in the use of molecular sequences for the discovery of protein function.

New Approach to the Coupling of γ-Amino β-Hydroxy Acids and β,γ-Dihydroxy Acids with α-Amino Acid Esters

1996 ◽  
Vol 61 (26) ◽  
pp. 9196-9201 ◽  
Author(s):  
Claudio Palomo ◽  
José I. Miranda ◽  
Anthony Linden
Keyword(s):  
Amino Acid ◽  
Amino Acid Esters ◽  
Hydroxy Acids ◽  
New Approach ◽  
Acid Esters

scholarly journals The Search for Supernova-Produced Radionuclides in Terrestrial Deep-Sea Archives

2012 ◽  
Vol 29 (2) ◽  
pp. 109-114 ◽  
Author(s):  
J. Feige ◽  
A. Wallner ◽  
S. R. Winkler ◽  
S. Merchel ◽  
L. K. Fifield ◽  
...  
Keyword(s):  
Solar System ◽  
Marine Sediment ◽  
Deep Sea ◽  
Massive Stars ◽  
Sediment Cores ◽  
Deep Ocean ◽  
Transport Mechanisms ◽  
Supernova Shell ◽  
Process Element ◽  
Insight Into

AbstractAn enhanced concentration of 60Fe was found in a deep ocean crust in 2004 in a layer corresponding to an age of ∼2 Myr. The confirmation of this signal in terrestrial archives as supernova-induced and the detection of other supernova-produced radionuclides is of great interest. We have identified two suitable marine sediment cores from the South Australian Basin and estimated the intensity of a possible signal of the supernova-produced radionuclides 26Al, 53Mn, 60Fe, and the pure r-process element 244Pu in these cores. The finding of these radionuclides in a sediment core might allow us to improve the time resolution of the signal and thus to link the signal to a supernova event in the solar vicinity ∼2 Myr ago. Furthermore, it gives us an insight into nucleosynthesis scenarios in massive stars, condensation into dust grains and transport mechanisms from the supernova shell into the solar system.

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