Coarse-Grained Molecular Dynamics Study of Cyclic Peptide Nanotube Insertion into a Lipid Bilayer†

Hyonseok Hwang; George C. Schatz; Mark A. Ratner

doi:10.1021/jp8080657

Coarse-Grained Molecular Dynamics Study of Cyclic Peptide Nanotube Insertion into a Lipid Bilayer†

The Journal of Physical Chemistry A ◽

10.1021/jp8080657 ◽

2009 ◽

Vol 113 (16) ◽

pp. 4780-4787 ◽

Cited By ~ 27

Author(s):

Hyonseok Hwang ◽

George C. Schatz ◽

Mark A. Ratner

Keyword(s):

Molecular Dynamics ◽

Lipid Bilayer ◽

Cyclic Peptide ◽

Coarse Grained ◽

Peptide Nanotube ◽

Cyclic Peptide Nanotube ◽

Coarse Grained Molecular Dynamics

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Coarse-Grained Molecular Dynamics Simulations of Cobra Cytotoxin A3 Interactions with a Lipid Bilayer: Penetration of Loops into Membranes

The Journal of Physical Chemistry B ◽

10.1021/jp107599v ◽

2011 ◽

Vol 115 (5) ◽

pp. 796-802 ◽

Cited By ~ 11

Author(s):

Zhi-Yuan Su ◽

Yeng-Tseng Wang

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Interactions of the S4 Helix of a Kv Channel with a Lipid Bilayer: Free Energy Calculations via Coarse-Grained Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2008.12.2491 ◽

2009 ◽

Vol 96 (3) ◽

pp. 483a

Author(s):

Chze Ling Wee ◽

Mark S.P. Sansom

Keyword(s):

Molecular Dynamics ◽

Free Energy ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Free Energy Calculations ◽

Coarse Grained ◽

Energy Calculations ◽

Kv Channel ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Interactions of Fullerene (C60) and its Hydroxyl Derivatives with Lipid Bilayer: A Coarse-Grained Molecular Dynamics Simulation

Brazilian Journal of Physics ◽

10.1007/s13538-013-0172-8 ◽

2013 ◽

Vol 44 (1) ◽

pp. 1-7 ◽

Cited By ~ 1

Author(s):

Dariush Mohammadyani ◽

Hamid Modarress ◽

Alber C. To ◽

Amir Amani

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Lipid Bilayer ◽

Fullerene C60 ◽

Dynamics Simulation ◽

Coarse Grained ◽

Coarse Grained Molecular Dynamics

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Coarse-Grained Molecular Dynamics Simulations of the Energetics of Helix Insertion into a Lipid Bilayer†

Biochemistry ◽

10.1021/bi800642m ◽

2008 ◽

Vol 47 (43) ◽

pp. 11321-11331 ◽

Cited By ~ 77

Author(s):

Peter J. Bond ◽

Chze Ling Wee ◽

Mark S. P. Sansom

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Coarse Grained Molecular Dynamics Simulation of Interaction between Hemagglutinin Fusion Peptides and Lipid Bilayer Membranes

Advances in Applied Mathematics and Mechanics ◽

10.4208/aamm.09-m0987 ◽

2010 ◽

Vol 2 (4) ◽

pp. 430-450 ◽

Cited By ~ 8

Author(s):

Naveen K. Vaidya

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Lipid Bilayer ◽

Dynamics Simulation ◽

Coarse Grained ◽

Fusion Peptides ◽

Lipid Bilayer Membranes ◽

Bilayer Membranes ◽

Coarse Grained Molecular Dynamics

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Molecular dynamics study of Na+ transportation in a cyclic peptide nanotube and its influences on water behaviors in the tube

Journal of Molecular Modeling ◽

10.1007/s00894-013-1899-4 ◽

2013 ◽

Vol 19 (10) ◽

pp. 4271-4282 ◽

Cited By ~ 11

Author(s):

Xuezeng Song ◽

Jianfen Fan ◽

Dongyan Liu ◽

Hui Li ◽

Rui Li

Keyword(s):

Molecular Dynamics ◽

Cyclic Peptide ◽

Peptide Nanotube ◽

Cyclic Peptide Nanotube

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Coarse-grained molecular dynamics simulations of shear-induced instabilities of lipid bilayer membranes in water

Physical Review E ◽

10.1103/physreve.82.051602 ◽

2010 ◽

Vol 82 (5) ◽

Cited By ~ 14

Author(s):

Itsuo Hanasaki ◽

Jens H. Walther ◽

Satoyuki Kawano ◽

Petros Koumoutsakos

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Lipid Bilayer Membranes ◽

Bilayer Membranes ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Coarse-Grained Molecular Dynamics Simulations of an Inhomogeneous Ternary Lipid Bilayer

Biophysical Journal ◽

10.1016/j.bpj.2008.12.2368 ◽

2009 ◽

Vol 96 (3) ◽

pp. 460a

Author(s):

Jason D. Perlmutter ◽

Jonathan N. Sachs

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Understanding the Interaction of Block Copolymers with DMPC Lipid Bilayer Using Coarse-Grained Molecular Dynamics Simulations

The Journal of Physical Chemistry B ◽

10.1021/jp306565e ◽

2012 ◽

Vol 116 (49) ◽

pp. 14333-14345 ◽

Cited By ~ 61

Author(s):

Samira Hezaveh ◽

Susruta Samanta ◽

Antonio De Nicola ◽

Giuseppe Milano ◽

Danilo Roccatano

Keyword(s):

Molecular Dynamics ◽

Block Copolymers ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Comparative study of stability and transport of molecules through cyclic peptide nanotube and aquaporin: a molecular dynamics simulation approach

Journal of Biomolecular Structure and Dynamics ◽

10.1080/07391102.2019.1570341 ◽

2019 ◽

Vol 38 (1) ◽

pp. 186-199 ◽

Cited By ~ 8

Author(s):

Nikhil Maroli ◽

Ponmalai Kolandaivel

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Comparative Study ◽

Cyclic Peptide ◽

Dynamics Simulation ◽

Simulation Approach ◽

Peptide Nanotube ◽

Cyclic Peptide Nanotube

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