Coarse-Grained Molecular Dynamics Simulations of the Energetics of Helix Insertion into a Lipid Bilayer†

Peter J. Bond; Chze Ling Wee; Mark S. P. Sansom

doi:10.1021/bi800642m

Coarse-Grained Molecular Dynamics Simulations of the Energetics of Helix Insertion into a Lipid Bilayer†

Biochemistry ◽

10.1021/bi800642m ◽

2008 ◽

Vol 47 (43) ◽

pp. 11321-11331 ◽

Cited By ~ 77

Author(s):

Peter J. Bond ◽

Chze Ling Wee ◽

Mark S. P. Sansom

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Coarse-Grained Molecular Dynamics Simulations of Cobra Cytotoxin A3 Interactions with a Lipid Bilayer: Penetration of Loops into Membranes

The Journal of Physical Chemistry B ◽

10.1021/jp107599v ◽

2011 ◽

Vol 115 (5) ◽

pp. 796-802 ◽

Cited By ~ 11

Author(s):

Zhi-Yuan Su ◽

Yeng-Tseng Wang

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Interactions of the S4 Helix of a Kv Channel with a Lipid Bilayer: Free Energy Calculations via Coarse-Grained Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2008.12.2491 ◽

2009 ◽

Vol 96 (3) ◽

pp. 483a

Author(s):

Chze Ling Wee ◽

Mark S.P. Sansom

Keyword(s):

Molecular Dynamics ◽

Free Energy ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Free Energy Calculations ◽

Coarse Grained ◽

Energy Calculations ◽

Kv Channel ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Coarse-grained molecular dynamics simulations of shear-induced instabilities of lipid bilayer membranes in water

Physical Review E ◽

10.1103/physreve.82.051602 ◽

2010 ◽

Vol 82 (5) ◽

Cited By ~ 14

Author(s):

Itsuo Hanasaki ◽

Jens H. Walther ◽

Satoyuki Kawano ◽

Petros Koumoutsakos

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Lipid Bilayer Membranes ◽

Bilayer Membranes ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Coarse-Grained Molecular Dynamics Simulations of an Inhomogeneous Ternary Lipid Bilayer

Biophysical Journal ◽

10.1016/j.bpj.2008.12.2368 ◽

2009 ◽

Vol 96 (3) ◽

pp. 460a

Author(s):

Jason D. Perlmutter ◽

Jonathan N. Sachs

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Understanding the Interaction of Block Copolymers with DMPC Lipid Bilayer Using Coarse-Grained Molecular Dynamics Simulations

The Journal of Physical Chemistry B ◽

10.1021/jp306565e ◽

2012 ◽

Vol 116 (49) ◽

pp. 14333-14345 ◽

Cited By ~ 61

Author(s):

Samira Hezaveh ◽

Susruta Samanta ◽

Antonio De Nicola ◽

Giuseppe Milano ◽

Danilo Roccatano

Keyword(s):

Molecular Dynamics ◽

Block Copolymers ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Study of Nanoparticle-Lipid Bilayer Interactions: Insights from Coarse-Grained Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2012.11.2371 ◽

2013 ◽

Vol 104 (2) ◽

pp. 426a ◽

Cited By ~ 1

Author(s):

Paraskevi Gkeka ◽

Panagiotis Angelikopoulos ◽

Zoe Cournia

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Understanding the mechanical and viscoelastic properties of graphene reinforced polycarbonate nanocomposites using coarse-grained molecular dynamics simulations

Computational Materials Science ◽

10.1016/j.commatsci.2021.110339 ◽

2021 ◽

Vol 191 ◽

pp. 110339

Author(s):

Jie Yang ◽

Daniel Custer ◽

Cho Chun Chiang ◽

Zhaoxu Meng ◽

X.H. Yao

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Viscoelastic Properties ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Effect of simulation temperature on phospholipid bilayer–vesicle transition studied by coarse-grained molecular dynamics simulations

Soft Matter ◽

10.1039/c3sm51038g ◽

2013 ◽

Vol 9 (30) ◽

pp. 7294 ◽

Cited By ~ 20

Author(s):

Choon-Peng Chng

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Phospholipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Bilayer Vesicle ◽

Coarse Grained Molecular Dynamics

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Accurate Prediction of Forster Resonance Energy Transfer during Co-translational Folding with Coarse-Grained Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2017.11.311 ◽

2018 ◽

Vol 114 (3) ◽

pp. 47a

Author(s):

Daniel A. Nissley ◽

Edward P. O'Brien

Keyword(s):

Molecular Dynamics ◽

Energy Transfer ◽

Molecular Dynamics Simulations ◽

Resonance Energy Transfer ◽

Resonance Energy ◽

Accurate Prediction ◽

Coarse Grained ◽

Förster Resonance Energy Transfer ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Adsorption-induced co-assembly of hairy and isotropic particles

Physical Chemistry Chemical Physics ◽

10.1039/c9cp06854f ◽

2020 ◽

Vol 22 (16) ◽

pp. 8757-8767

Author(s):

Tomasz Staszewski ◽

Małgorzata Borówko

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

We use coarse-grained molecular dynamics simulations to study the behavior of polymer-tethered particles immersed in fluids of isotropic particles.

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