Packing of Planar Organic Molecules: Interplay of van der Waals and Electrostatic Interaction

2008 ◽  
Vol 8 (8) ◽  
pp. 3053-3057 ◽  
Author(s):  
Daniel Käfer ◽  
Mira El Helou ◽  
Christian Gemel ◽  
Gregor Witte
Carbon ◽  
2018 ◽  
Vol 131 ◽  
pp. 246-257 ◽  
Author(s):  
Akinola D. Oyedele ◽  
Christopher M. Rouleau ◽  
David B. Geohegan ◽  
Kai Xiao

ACS Nano ◽  
2018 ◽  
Vol 12 (4) ◽  
pp. 4062-4073 ◽  
Author(s):  
Yu Huang ◽  
Fuwei Zhuge ◽  
Junxian Hou ◽  
Liang Lv ◽  
Peng Luo ◽  
...  

1975 ◽  
Vol 53 (19) ◽  
pp. 2965-2970 ◽  
Author(s):  
John T. Edward ◽  
Patrick G. Farrell

The partial molal volumes [Formula: see text] of nonpolar organic molecules (i.e. those having more than three aliphatic carbon atoms per polar hydroxyl, ether, amine, amide, or urea group) in water at 25 °C are given by their van der Waals volumes υw plus the additional empty volume provided by an enclosing shell 0.53 Å thick. An equation relates [Formula: see text] to υw More polar compounds (i.e. those having fewer than two or three aliphatic carbon atoms per polar group) have [Formula: see text] smaller than calculated by the equation; the shrinkage in [Formula: see text] from that computed is linearly related to the fraction of the total surface area of the molecule occupied by the polar group.


1985 ◽  
Vol 63 (7) ◽  
pp. 2018-2025 ◽  
Author(s):  
A. D. Buckingham ◽  
P. W. Fowler

Structures of Van der Waals complexes are predicted by a simple model based on electrostatic interaction between the monomers. Point multipoles are assigned to the atoms and embedded in hard spheres to represent short-range repulsions. Structures deduced for some 29 complexes are in agreement with experiment, and numerous predictions are made.


2020 ◽  
Author(s):  
Tamar Stein ◽  
Partha P. Bera ◽  
Timothy J. Lee ◽  
Martin Head-Gordon

The growth mechanisms of organic molecules in an ionizing environment such as the interstellar medium are not completely understood. Here we examine by means of ab initio molecular dynamics (AIMD) simulations and density functional theory (DFT) computations the possibility of bond formation and molecular growth upon ionization of Van der Waals clusters of pure HCN clusters, and mixed clusters of HCN and HCCH, both of which are widespread in the interstellar medium. Ionization of van der Waals clusters can potentially lead to growth in low temperature and low-density environments. Our results show, that upon ionization of the pure HCN clusters, strongly bound stable structures are formed that contain NH bonds, and growth beyond pairwise HCN molecules is seen only in a small percentage of cases. In contrast, mixed clusters, where HCCH is preferentially ionized over HCN, can grow up to 3 or 4 units long with new carbon-carbon and carbon-nitrogen covalent bonds. Moreover, cyclic molecules formed, such as the radical cation of pyridine, which is a prebiotic molecule. The results presented here are significant as they provide a feasible pathway for molecular growth of small organic molecules containing both carbon and nitrogen in cold and relatively denser environments such as in dense molecular clouds but closer to the photo-dissociation regions, and protoplanetary disks. In the mechanism we propose, first, a neutral van der Waals cluster is formed. Once the cluster is formed it can undergo photoionization which leads to chemical reactivity without any reaction barrier.


2017 ◽  
Vol 13 (3) ◽  
pp. 1328-1340 ◽  
Author(s):  
František Karlický ◽  
Eva Otyepková ◽  
Rabindranath Lo ◽  
Michal Pitoňák ◽  
Petr Jurečka ◽  
...  

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