Structure, dynamics, and energetics of deoxyguanosine-thymidine wobble base pair formation in the self-complementary d(CGTGAATTCGCG) duplex in solution

Biochemistry ◽  
1982 ◽  
Vol 21 (3) ◽  
pp. 437-444 ◽  
Author(s):  
Dinshaw J. Patel ◽  
Sharon A. Kozlowski ◽  
Luis A. Marky ◽  
Janet A. Rice ◽  
Chris Broka ◽  
...  
Keyword(s):  
Base Pair ◽  
Pair Formation ◽  
The Self ◽  
Structure Dynamics

scholarly journals Hidden in Plain Sight: Subtle Effects of the 8-Oxoguanine Lesion on the Structure, Dynamics, and Thermodynamics of a 15-Base Pair Oligodeoxynucleotide Duplex

Biochemistry ◽  
2011 ◽  
Vol 50 (39) ◽  
pp. 8463-8477 ◽  
Author(s):  
Charisse M. Crenshaw ◽  
Jacqueline E. Wade ◽  
Haribabu Arthanari ◽  
Dominique Frueh ◽  
Benjamin F. Lane ◽  
...  
Keyword(s):  
Base Pair ◽  
Structure Dynamics

scholarly journals Analysis of intermolecular base pair formation of prohead RNA of the phage ø29 DNA packaging motor using NMR spectroscopy

2007 ◽  
Vol 36 (3) ◽  
pp. 839-848 ◽  
Author(s):  
Aya Kitamura ◽  
Paul J. Jardine ◽  
Dwight L. Anderson ◽  
Shelley Grimes ◽  
Hiroshi Matsuo
Keyword(s):  
Nmr Spectroscopy ◽  
Base Pair ◽  
Dna Packaging ◽  
Pair Formation ◽  
Dna Packaging Motor

Adenosine-1,3-diazaphenoxazine Derivative for Selective Base Pair Formation with 8-Oxo-2′-deoxyguanosine in DNA

2011 ◽  
Vol 133 (19) ◽  
pp. 7272-7275 ◽  
Author(s):  
Yosuke Taniguchi ◽  
Ryota Kawaguchi ◽  
Shigeki Sasaki
Keyword(s):  
Base Pair ◽  
Pair Formation

Formulation of Impurity-Vacancy Pair Formation Energy in Fast Diffusion

2010 ◽  
Vol 305-306 ◽  
pp. 49-53
Author(s):  
Amitava Ghorai
Keyword(s):  
Diffusion Coefficient ◽  
Formation Energy ◽  
Pair Formation ◽  
The Self ◽  
Fast Diffusion ◽  
Pseudopotential Theory ◽  
Self Diffusion ◽  
Impurity Diffusion Coefficient ◽  
Vacancy Pair ◽  
Self Diffusion Coefficient

In fast diffusion, the impurity diffusion coefficient is much greater than the self-diffusion coefficient. The pair mechanism is here considered to explain fast diffusion. Formulations for the formation of the pair are based upon pseudopotential theory.

scholarly journals Intrastrand Base Pair Formation in Repetitive DNA Sequences

2018 ◽  
Vol 114 (3) ◽  
pp. 597a-598a
Author(s):  
Marisa Mitchell ◽  
Carolina Dunbar ◽  
Thao Tran ◽  
Brian Cannon
Keyword(s):  
Repetitive Dna ◽  
Dna Sequences ◽  
Base Pair ◽  
Pair Formation ◽  
Repetitive Dna Sequences

Design and synthesis of a novel fluorescent benzo[g]imidazo[4,5-c]quinoline nucleoside for monitoring base-pair-induced protonation with cytosine: distinguishing cytosine via changes in the intensity and wavelength of fluorescence

2016 ◽  
Vol 14 (16) ◽  
pp. 3934-3942 ◽  
Author(s):  
Shogo Siraiwa ◽  
Azusa Suzuki ◽  
Ryuzi Katoh ◽  
Yoshio Saito
Keyword(s):  
Base Pair ◽  
Pair Formation ◽  
Design And Synthesis

A novel fluorescent benzo[g]imidazo[4,5-c]quinoline nucleoside BIQA was developed and used to monitor BIQA–C base-pair formation in ODN duplexes.

Heats of base pair formation with adenine and uracil analogs

1968 ◽  
Vol 31 (1) ◽  
pp. 91-99 ◽  
Author(s):  
Jesse S. Binford ◽  
Dennis M. Holloway
Keyword(s):  
Base Pair ◽  
Pair Formation

Additional Base-Pair Formation in DNA Duplexes by a Double-Headed Nucleotide

2012 ◽  
Vol 18 (24) ◽  
pp. 7434-7442 ◽  
Author(s):  
Charlotte S. Madsen ◽  
Sarah Witzke ◽  
Pawan Kumar ◽  
Kushuma Negi ◽  
Pawan K. Sharma ◽  
...  
Keyword(s):  
Base Pair ◽  
Pair Formation ◽  
Dna Duplexes ◽  
Additional Base
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