Fragmentation of proteins with o-iodosobenzoic acid: chemical mechanism and identification of o-iodoxybenzoic acid as a reactive contaminant that modifies tyrosyl residues

Biochemistry ◽  
1981 ◽  
Vol 20 (2) ◽  
pp. 443-448 ◽  
Author(s):  
W. C. Mahoney ◽  
P. K. Smith ◽  
M. A. Hermodson
Keyword(s):  
Chemical Mechanism ◽  
Iodosobenzoic Acid

Graphene and Graphene Oxide Applications for SERS Sensing and Imaging

2019 ◽  
Vol 26 (38) ◽  
pp. 6878-6895 ◽  
Author(s):  
Anna Jabłońska ◽  
Aleksandra Jaworska ◽  
Mateusz Kasztelan ◽  
Sylwia Berbeć ◽  
Barbara Pałys
Keyword(s):  
Graphene Oxide ◽  
Surface Enhanced Raman Spectroscopy ◽  
Biological Species ◽  
Chemical Mechanism ◽  
Aromatic Molecules ◽  
Sers Enhancement ◽  
Reduced Graphene ◽  
Surface Enhanced Raman ◽  
Active Nanoparticles ◽  
Fluorescence Quencher

: Surface Enhanced Raman Spectroscopy (SERS) has a long history as an ultrasensitive platform for the detection of biological species from small aromatic molecules to complex biological systems as circulating tumor cells. Thanks to unique properties of graphene, the range of SERS applications has largely expanded. Graphene is efficient fluorescence quencher improving quality of Raman spectra. It contributes also to the SERS enhancement factor through the chemical mechanism. In turn, the chemical flexibility of Reduced Graphene Oxide (RGO) enables tunable adsorption of molecules or cells on SERS active surfaces. Graphene oxide composites with SERS active nanoparticles have been also applied for Raman imaging of cells. This review presents a survey of SERS assays employing graphene or RGO emphasizing the improvement of SERS enhancement brought by graphene or RGO. The structure and physical properties of graphene and RGO will be discussed too.

scholarly journals Comprehensive modeling of bloodstain aging by multivariate Raman spectral resolution with kinetics

2019 ◽  
Vol 2 (1) ◽  
Author(s):  
Ayari Takamura ◽  
Daisuke Watanabe ◽  
Rintaro Shimada ◽  
Takeaki Ozawa
Keyword(s):  
Spectral Resolution ◽  
Aging Process ◽  
Near Infrared ◽  
Biochemical Characterization ◽  
Forensic Analysis ◽  
Chemical Mechanism ◽  
Experimental Conditions ◽  
Spectral Components ◽  
Different Temperatures ◽  
Analytical Approaches

Abstract Blood, as a cardinal biological system, is a challenging target for biochemical characterization because of sample complexity and a lack of analytical approaches. To reveal and evaluate aging process of blood compositions is an unexplored issue in forensic analysis, which is useful to elucidate the details of a crime. Here we demonstrate a spectral deconvolution model of near-infrared Raman spectra of bloodstain to comprehensively describe the aging process based on the chemical mechanism, particularly the kinetics. The bloodstain spectra monitored over several months at different temperatures are decomposed into significant spectral components by multivariate calculation. The kinetic schemes of the spectral components are explored and subsequently incorporated into the developed algorithm for the optimal spectral resolution. Consequently, the index of bloodstain aging is proposed, which can be used under different experimental conditions. This work provides a novel perspective on the chemical mechanisms in bloodstain aging and facilitates forensic applications.

scholarly journals Practical Synthesis of 2-Iodosobenzoic Acid (IBA) without Contamination by Hazardous 2-Iodoxybenzoic Acid (IBX) under Mild Conditions

Molecules ◽  
2021 ◽  
Vol 26 (7) ◽  
pp. 1897
Author(s):  
Hideyasu China ◽  
Nami Kageyama ◽  
Hotaka Yatabe ◽  
Naoko Takenaga ◽  
Toshifumi Dohi
Keyword(s):  
Aqueous Solution ◽  
Room Temperature ◽  
Practical Method ◽  
Hypervalent Iodine ◽  
Mild Conditions ◽  
Sequential Procedures ◽  
Iodine Compounds ◽  
Practical Synthesis ◽  
Iodosobenzoic Acid ◽  
Lower Temperature

We report a convenient and practical method for the preparation of nonexplosive cyclic hypervalent iodine(III) oxidants as efficient organocatalysts and reagents for various reactions using Oxone® in aqueous solution under mild conditions at room temperature. The thus obtained 2-iodosobenzoic acids (IBAs) could be used as precursors of other cyclic organoiodine(III) derivatives by the solvolytic derivatization of the hydroxy group under mild conditions of 80 °C or lower temperature. These sequential procedures are highly reliable to selectively afford cyclic hypervalent iodine compounds in excellent yields without contamination by hazardous pentavalent iodine(III) compound.

The Abiotic Nitrite Oxidation by Ligand-Bound Manganese (III): The Chemical Mechanism

2021 ◽  
Author(s):  
George W. Luther III ◽  
Jennifer S. Karolewski ◽  
Kevin M. Sutherland ◽  
Colleen M. Hansel ◽  
Scott D. Wankel
Keyword(s):  
Chemical Mechanism ◽  
Nitrite Oxidation

scholarly journals Photochemically induced cyclic morphological dynamics via degradation of autonomously produced, self-assembled polymer vesicles

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Chenyu Lin ◽  
Sai Krishna Katla ◽  
Juan Pérez-Mercader
Keyword(s):  
Morphological Evolution ◽  
Chemical Degradation ◽  
Chemical Mechanism ◽  
Giant Vesicles ◽  
Water Influx ◽  
Physico Chemical ◽  
Osmotic Water ◽  
Periodic Growth ◽  
Oxygen Conditions ◽  
Self Assembled

AbstractAutonomous and out-of-equilibrium vesicles synthesised from small molecules in a homogeneous aqueous medium are an emerging class of dynamically self-assembled systems with considerable potential for engineering natural life mimics. Here we report on the physico-chemical mechanism behind a dynamic morphological evolution process through which self-assembled polymeric structures autonomously booted from a homogeneous mixture, evolve from micelles to giant vesicles accompanied by periodic growth and implosion cycles when exposed to oxygen under light irradiation. The system however formed nano-objects or gelation under poor oxygen conditions or when heated. We determined the cause to be photoinduced chemical degradation within hydrated polymer cores inducing osmotic water influx and the subsequent morphological dynamics. The process also led to an increase in the population of polymeric objects through system self-replication. This study offers a new path toward the design of chemically self-assembled systems and their potential application in autonomous material artificial simulation of living systems.

scholarly journals Comparisons of observed and modeled OH and HO2concentrations during the ambient measurement period of the HOxComp field campaign

2012 ◽  
Vol 12 (5) ◽  
pp. 2567-2585 ◽  
Author(s):  
Y. Kanaya ◽  
A. Hofzumahaus ◽  
H.-P. Dorn ◽  
T. Brauers ◽  
H. Fuchs ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Chemical Mechanism ◽  
Ozone Production ◽  
High Yield ◽  
Base Case ◽  
Peroxy Radicals ◽  
Field Campaign ◽  
Mixing Ratios ◽  
Measurement Mode ◽  
Single Instrument

Abstract. A photochemical box model constrained by ancillary observations was used to simulate OH and HO2 concentrations for three days of ambient observations during the HOxComp field campaign held in Jülich, Germany in July 2005. Daytime OH levels observed by four instruments were fairly well reproduced to within 33% by a base model run (Regional Atmospheric Chemistry Mechanism with updated isoprene chemistry adapted from Master Chemical Mechanism ver. 3.1) with high R2 values (0.72–0.97) over a range of isoprene (0.3–2 ppb) and NO (0.1–10 ppb) mixing ratios. Daytime HO2(*) levels, reconstructed from the base model results taking into account the sensitivity toward speciated RO2 (organic peroxy) radicals, as recently reported from one of the participating instruments in the HO2 measurement mode, were 93% higher than the observations made by the single instrument. This also indicates an overprediction of the HO2 to OH recycling. Together with the good model-measurement agreement for OH, it implies a missing OH source in the model. Modeled OH and HO2(*) could only be matched to the observations by addition of a strong unknown loss process for HO2(*) that recycles OH at a high yield. Adding to the base model, instead, the recently proposed isomerization mechanism of isoprene peroxy radicals (Peeters and Müller, 2010) increased OH and HO2(*) by 28% and 13% on average. Although these were still only 4% higher than the OH observations made by one of the instruments, larger overestimations (42–70%) occurred with respect to the OH observations made by the other three instruments. The overestimation in OH could be diminished only when reactive alkanes (HC8) were solely introduced to the model to explain the missing fraction of observed OH reactivity. Moreover, the overprediction of HO2(*) became even larger than in the base case. These analyses imply that the rates of the isomerization are not readily supported by the ensemble of radical observations. One of the measurement days was characterized by low isoprene concentrations (∼0.5 ppb) and OH reactivity that was well explained by the observed species, especially before noon. For this selected period, as opposed to the general behavior, the model tended to underestimate HO2(*). We found that this tendency is associated with high NOx concentrations, suggesting that some HO2 production or regeneration processes under high NOx conditions were being overlooked; this might require revision of ozone production regimes.

Sodium metabisulfite as a contact allergen - an example of a rare chemical mechanism for protein modification

2012 ◽  
Vol 66 (3) ◽  
pp. 123-127 ◽  
Author(s):  
David W. Roberts ◽  
David Basketter ◽  
Ian Kimber ◽  
Jonathan White ◽  
John McFadden ◽  
...  
Keyword(s):  
Protein Modification ◽  
Chemical Mechanism ◽  
Sodium Metabisulfite ◽  
Contact Allergen

scholarly journals Chemical Mechanism of ATP Synthase

1999 ◽  
Vol 274 (41) ◽  
pp. 28853-28856 ◽  
Author(s):  
Young Hee Ko ◽  
Sangjin Hong ◽  
Peter L. Pedersen
Keyword(s):  
Atp Synthase ◽  
Chemical Mechanism
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