EcoExpress—Highly Efficient Construction and Expression of Multicomponent Protein Complexes in Escherichia coli

2016 ◽  
Vol 5 (11) ◽  
pp. 1239-1246 ◽  
Author(s):  
Yiran Qin ◽  
Chang Tan ◽  
Jiwei Lin ◽  
Qin Qin ◽  
Jianghaiyang He ◽  
...  
2021 ◽  
Vol 193 ◽  
pp. 110570
Author(s):  
Dan Wu ◽  
Tsz Ho Tsang ◽  
Ho Yin Yip ◽  
Wei Wang ◽  
Po Keung Wong

2017 ◽  
Vol 139 (36) ◽  
pp. 12736-12744 ◽  
Author(s):  
Yang Hu ◽  
Ke Yu ◽  
Li-Li Shi ◽  
Lei Liu ◽  
Jing-Jing Sui ◽  
...  

2021 ◽  
Vol 12 ◽  
Author(s):  
Suzanne Paley ◽  
Ingrid M. Keseler ◽  
Markus Krummenacker ◽  
Peter D. Karp

Updating genome databases to reflect newly published molecular findings for an organism was hard enough when only a single strain of a given organism had been sequenced. With multiple sequenced strains now available for many organisms, the challenge has grown significantly because of the still-limited resources available for the manual curation that corrects errors and captures new knowledge. We have developed a method to automatically propagate multiple types of curated knowledge from genes and proteins in one genome database to their orthologs in uncurated databases for related strains, imposing several quality-control filters to reduce the chances of introducing errors. We have applied this method to propagate information from the highly curated EcoCyc database for Escherichia coli K–12 to databases for 480 other Escherichia coli strains in the BioCyc database collection. The increase in value and utility of the target databases after propagation is considerable. Target databases received updates for an average of 2,535 proteins each. In addition to widespread addition and regularization of gene and protein names, 97% of the target databases were improved by the addition of at least 200 new protein complexes, at least 800 new or updated reaction assignments, and at least 2,400 sets of GO annotations.


2015 ◽  
Vol 51 (7) ◽  
pp. 751-756 ◽  
Author(s):  
A. D. Novikov ◽  
D. D. Derbikov ◽  
O. V. Shaposhnikova ◽  
T. A. Gubanova ◽  
S. V. Kameneva ◽  
...  

1988 ◽  
Vol 8 (3) ◽  
pp. 1206-1215
Author(s):  
C F Clarke ◽  
K Cheng ◽  
A B Frey ◽  
R Stein ◽  
P W Hinds ◽  
...  

Oligomeric protein complexes containing the nuclear oncogene p53 and the simian virus 40 large tumor antigen (D. I. H. Linzer and A. J. Levine, Cell 17:43-51, 1979), the adenovirus E1B 55-kilodalton (kDa) tumor antigen, and the heat shock protein hsc70 (P. Hinds, C. Finlay, A. Frey, and A. J. Levine, Mol. Cell. Biol. 7:2863-2869, 1987) have all been previously described. To begin isolating, purifying, and testing these complexes for functional activities, we have developed a rapid immunoaffinity column purification. p53-protein complexes are eluted from the immunoaffinity column by using a molar excess of a peptide comprising the epitope recognized by the p53 monoclonal antibody. This mild and specific elution condition allows p53-protein interactions to be maintained. The hsc70-p53 complex from rat cells is heterogeneous in size, with some forms of this complex associated with a 110-kDa protein. The maximum apparent molecular mass of such complexes is 660,000 daltons. Incubation with micromolar levels of ATP dissociates this complex in vitro into p53 and hsc70 110-kDa components. Nonhydrolyzable substrates of ATP fail to promote this dissociation of the complex. Murine p53 synthesized in Escherichia coli has been purified 660-fold on the same antibody affinity column and was found to be associated with an E. coli protein of 70 kDa. Immunoblot analysis with specific antisera demonstrated that this E. coli protein was the heat shock protein dnaK, which has extensive sequence homology with the rat hsc70 protein. Incubation of the immunopurified p53-dnaK complex with ATP resulted in the dissociation of the p53-dnaK complex as it did with the p53-hsc70 complex. This remarkable conservation of p53-heat shock protein interactions and the specificity of dissociation reactions suggest a functionally important role for heat shock proteins in their interactions with oncogene proteins.


Plant Methods ◽  
2019 ◽  
Vol 15 (1) ◽  
Author(s):  
Joan Marquez-Molins ◽  
Jose Antonio Navarro ◽  
Vicente Pallas ◽  
Gustavo Gomez

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