Sequence-Dependent Kink Formation in Short DNA Loops: Theory and Molecular Dynamics Simulations

2021 ◽  
Vol 17 (3) ◽  
pp. 1308-1317
Author(s):  
Gyehyun Park ◽  
Myung Keun Cho ◽  
YounJoon Jung
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Dna Loops ◽  
Sequence Dependent ◽  
Dynamics Simulations

scholarly journals Sequence-dependent DNA deformability studied using molecular dynamics simulations

2007 ◽  
Vol 35 (18) ◽  
pp. 6063-6074 ◽  
Author(s):  
Satoshi Fujii ◽  
Hidetoshi Kono ◽  
Shigeori Takenaka ◽  
Nobuhiro Go ◽  
Akinori Sarai
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Sequence Dependent ◽  
Dynamics Simulations

scholarly journals Sequence-dependent mechanical properties of double-stranded RNA

Nanoscale ◽  
2019 ◽  
Vol 11 (44) ◽  
pp. 21471-21478 ◽  
Author(s):  
Alberto Marin-Gonzalez ◽  
J. G. Vilhena ◽  
Fernando Moreno-Herrero ◽  
Ruben Perez
Keyword(s):  
Mechanical Properties ◽  
Molecular Dynamics ◽  
Nucleotide Sequence ◽  
Molecular Dynamics Simulations ◽  
Mechanical Response ◽  
Double Stranded Rna ◽  
Sequence Dependent ◽  
Dynamics Simulations

Atomistic molecular dynamics simulations reveal the strikingly different effect of the nucleotide sequence on the mechanical response of dsRNA and dsDNA.

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