Repressed Gene Expression of Photosynthetic Antenna Proteins Associated with Yellow Leaf Variation as Revealed by Bulked Segregant RNA-seq in Tea Plant Camellia sinensis

2020 ◽  
Vol 68 (30) ◽  
pp. 8068-8079
Author(s):  
Jun-Ya Wang ◽  
Jie-Dan Chen ◽  
Song-Lin Wang ◽  
Liang Chen ◽  
Chun-Lei Ma ◽  
...  
Keyword(s):  
Gene Expression ◽  
Camellia Sinensis ◽  
Tea Plant ◽  
Yellow Leaf ◽  
Rna Seq ◽  
Leaf Variation ◽  
Antenna Proteins ◽  
Photosynthetic Antenna

scholarly journals Integrated RNA-Seq and sRNA-Seq Analysis Identifies Chilling and Freezing Responsive Key Molecular Players and Pathways in Tea Plant (Camellia sinensis)

PLoS ONE ◽  
2015 ◽  
Vol 10 (4) ◽  
pp. e0125031 ◽  
Author(s):  
Chao Zheng ◽  
Lei Zhao ◽  
Yu Wang ◽  
Jiazhi Shen ◽  
Yinfei Zhang ◽  
...  
Keyword(s):  
Camellia Sinensis ◽  
Tea Plant ◽  
Rna Seq

Transcriptome profiling analysis of tea plant (Camellia sinensis) using Oxford Nanopore long-read RNA-Seq technology

Gene ◽  
2021 ◽  
Vol 769 ◽  
pp. 145247
Author(s):  
Fen Wang ◽  
Zhi Chen ◽  
Huimin Pei ◽  
Zhiyou Guo ◽  
Di Wen ◽  
...  
Keyword(s):  
Camellia Sinensis ◽  
Transcriptome Profiling ◽  
Tea Plant ◽  
Rna Seq ◽  
Oxford Nanopore ◽  
Long Read ◽  
Profiling Analysis

scholarly journals Effect of fluoride treatment on gene expression in tea plant (Camellia sinensis)

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Qing-Sheng Li ◽  
Xiao-Ming Lin ◽  
Ru-Ying Qiao ◽  
Xin-Qiang Zheng ◽  
Jian-Liang Lu ◽  
...  
Keyword(s):  
Gene Expression ◽  
Camellia Sinensis ◽  
Tea Plant ◽  
Fluoride Treatment

scholarly journals TeaAS: a comprehensive database for alternative splicing in tea plants (Camellia sinensis)

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Xiaozeng Mi ◽  
Yi Yue ◽  
Mengsha Tang ◽  
Yanlin An ◽  
Hui Xie ◽  
...  
Keyword(s):  
Alternative Splicing ◽  
Camellia Sinensis ◽  
Tea Plant ◽  
Local Alignment ◽  
The Novel ◽  
Rna Seq ◽  
Expression Levels ◽  
Comprehensive Information ◽  
Search Tool ◽  
Tea Plants

AbstractAlternative splicing (AS) increases the diversity of transcripts and proteins through the selection of different splice sites and plays an important role in the growth, development and stress tolerance of plants. With the release of the reference genome of the tea plant (Camellia sinensis) and the development of transcriptome sequencing, researchers have reported the existence of AS in tea plants. However, there is a lack of a platform, centered on different RNA-seq datasets, that provides comprehensive information on AS.To facilitate access to information on AS and reveal the molecular function of AS in tea plants, we established the first comprehensive AS database for tea plants (TeaAS, http://www.teaas.cn/index.php). In this study, 3.96 Tb reads from 66 different RNA-seq datasets were collected to identify AS events. TeaAS supports four methods of retrieval of AS information based on gene ID, gene name, annotation (non-redundant/Kyoto encyclopedia of genes and genomes/gene ontology annotation or chromosomal location) and RNA-seq data. It integrates data pertaining to genome annotation, type of AS event, transcript sequence, and isoforms expression levels from 66 RNA-seq datasets. The AS events resulting from different environmental conditions and that occurring in varied tissue types, and the expression levels of specific transcripts can be clearly identified through this online database. Moreover, it also provides two useful tools, Basic Local Alignment Search Tool and Generic Genome Browser, for sequence alignment and visualization of gene structure.The features of the TeaAS database make it a comprehensive AS bioinformatics platform for researchers, as well as a reference for studying AS events in woody crops. It could also be helpful for revealing the novel biological functions of AS in gene regulation in tea plants.

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