scholarly journals Multistep Folding Kinetics of Group I Intron RNA Studied by Mg 2+ -Concentration Jump Simulations

2017 ◽  
Vol 112 (3) ◽  
pp. 370a
Author(s):  
Naoto Hori ◽  
Natalia A. Denesyuk ◽  
D Thirumalai
Keyword(s):  
Group I Intron ◽  
Folding Kinetics ◽  
Concentration Jump ◽  
Group I ◽  
Kinetics Of

scholarly journals Simulation of Folding Kinetics for Aligned RNAs

Genes ◽  
2021 ◽  
Vol 12 (3) ◽  
pp. 347
Author(s):  
Jiabin Huang ◽  
Björn Voß
Keyword(s):  
Evolutionary Conservation ◽  
Folding Kinetics ◽  
New Approach ◽  
Computational Approaches ◽  
Reasonable Time ◽  
Valuable Method ◽  
Kinetics Of ◽  
Insight Into ◽  
Folding Space ◽  
Standing Problem

Studying the folding kinetics of an RNA can provide insight into its function and is thus a valuable method for RNA analyses. Computational approaches to the simulation of folding kinetics suffer from the exponentially large folding space that needs to be evaluated. Here, we present a new approach that combines structure abstraction with evolutionary conservation to restrict the analysis to common parts of folding spaces of related RNAs. The resulting algorithm can recapitulate the folding kinetics known for single RNAs and is able to analyse even long RNAs in reasonable time. Our program RNAliHiKinetics is the first algorithm for the simulation of consensus folding kinetics and addresses a long-standing problem in a new and unique way.

scholarly journals Lead cleavage sites in the core structure of group I intron-RNA

1993 ◽  
Vol 21 (2) ◽  
pp. 311-317 ◽  
Author(s):  
Barbara Striecjer ◽  
Uwe von Ahsen ◽  
Renée Schroeder
Keyword(s):  
Group I Intron ◽  
Core Structure ◽  
Cleavage Sites ◽  
The Core ◽  
Group I

scholarly journals Modulation of Folding Kinetics of Repeat Proteins: Interplay between Intra- and Interdomain Interactions

2012 ◽  
Vol 103 (7) ◽  
pp. 1555-1565 ◽  
Author(s):  
Tzachi Hagai ◽  
Ariel Azia ◽  
Emmanuel Trizac ◽  
Yaakov Levy
Keyword(s):  
Folding Kinetics ◽  
Repeat Proteins ◽  
Interdomain Interactions ◽  
Kinetics Of

An exceptional group-I intron-like insertion in the SSU rDNA of lichen mycobionts

1999 ◽  
Vol 35 (5) ◽  
pp. 536-541 ◽  
Author(s):  
M. Grube ◽  
B. Gutmann ◽  
U. Arup ◽  
A. de los Rios ◽  
J.-E. Mattsson ◽  
...  
Keyword(s):  
Group I Intron ◽  
Ssu Rdna ◽  
Exceptional Group ◽  
Group I

scholarly journals Activation of the catalytic core of a group I intron by a remote 3' splice junction.

1992 ◽  
Vol 6 (8) ◽  
pp. 1373-1385 ◽  
Author(s):  
F Michel ◽  
L Jaeger ◽  
E Westhof ◽  
R Kuras ◽  
F Tihy ◽  
...  
Keyword(s):  
Group I Intron ◽  
Splice Junction ◽  
Catalytic Core ◽  
Group I

Stability and Folding Kinetics of Structurally Characterized Cytochromec-b562†,‡

Biochemistry ◽  
2006 ◽  
Vol 45 (35) ◽  
pp. 10504-10511 ◽  
Author(s):  
Jasmin Faraone-Mennella ◽  
F. Akif Tezcan ◽  
Harry B. Gray ◽  
Jay R. Winkler
Keyword(s):  
Folding Kinetics ◽  
Kinetics Of
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