Reanalysis of 5S rRNA sequence data for the Vibrionaceae with the clustan program suite

1987 ◽  
Vol 15 (6) ◽  
pp. 329-335 ◽  
Author(s):  
Steven P. Nearhos ◽  
John A. Fuerst
Keyword(s):  
5S Rrna ◽  
1985 ◽  
Vol 82 (4) ◽  
pp. 1160-1164 ◽  
Author(s):  
M. J. Rogers ◽  
J. Simmons ◽  
R. T. Walker ◽  
W. G. Weisburg ◽  
C. R. Woese ◽  
...  

1983 ◽  
Vol 29 (1) ◽  
pp. 52-59 ◽  
Author(s):  
Diarmuid E. Nicholson ◽  
George E. Fox

The 5S rRNAs from Halobacterium vallismortis, Halobacterium marismortui (the Ginzburg strain), and two extremely halophilic isolates that exhibit an unusual "box-shaped" morphology were examined by ribonuclease T1 fingerprinting. The 5S rRNAs are found to be essentially identical and it is concluded that the four strains are in fact close phylogenetic relatives that should properly be assigned to a single genus. Comparison with previously available 5S rRNA sequence data from Halobacterium cutirubrum and Halococcus morrhuae indicates that the four strains examined here are quite distinct from both. It is further argued that this molecular evidence is not inconsistent with the previously proposed creation of a new genus, Haloarcula.


Biosystems ◽  
1991 ◽  
Vol 25 (1-2) ◽  
pp. 85-100 ◽  
Author(s):  
Mark A. Buchheim ◽  
Russell L. Chapman
Keyword(s):  

1989 ◽  
Vol 11 (2) ◽  
pp. 182-186 ◽  
Author(s):  
Rita R. Colwell ◽  
Michael T. Macdonell ◽  
David Swartz

2013 ◽  
Vol 27 (6) ◽  
pp. 655 ◽  
Author(s):  
Philip J. Sirvid ◽  
Nicole E. Moore ◽  
Geoffrey K. Chambers ◽  
Kelly Prendergast

We tested competing theories on the origins of the New Zealand fauna using thomisid spiders as a model group. These theories can be broadly described as old and vicariant versus young and recent (dispersal). To test these theories, a phylogenetic analysis was undertaken based on cytochrome c oxidase subunit I (COI) and 28S rRNA sequence data, with smaller datasets (histone H3, nicotinamide adenine dinucleotide (NADH) dehydrogenase subunit 1 and a combined dataset) used to improve resolution of internal branches. The monophyly of New Zealand thomisid subfamilies and of individual taxa were also assessed using these data. Our data supports the separation of New Zealand clades from their Australian counterparts. Evidence of recent dispersal to New Zealand by Australian stephanopines combined with our proposed maximum divergence date of 5.3 mya indicates that the New Zealand thomisids are a younger lineage than previously suspected. Several other gene targets (internal transcribed spacer units 1 and 2, wingless and 18S rRNA) were examined but did not generate sufficient reliable data to contribute to the analysis. Corrected p-distance values for COI indicate that Sidymella angularis, a widely distributed and morphologically variable stephanopine species, is a single taxon. Three undescribed endemic species exhibited molecular and morphological distinctiveness from previously described New Zealand thomisids.


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