Representation of selected-reaction monitoring data in the mzQuantML data standard

Da Qi; Craig Lawless; Johan Teleman; Fredrik Levander; Stephen W. Holman; Simon Hubbard; Andrew R. Jones

doi:10.1002/pmic.201400281

Representation of selected-reaction monitoring data in the mzQuantML data standard

PROTEOMICS ◽

10.1002/pmic.201400281 ◽

2015 ◽

Vol 15 (15) ◽

pp. 2592-2596 ◽

Cited By ~ 6

Author(s):

Da Qi ◽

Craig Lawless ◽

Johan Teleman ◽

Fredrik Levander ◽

Stephen W. Holman ◽

...

Keyword(s):

Monitoring Data ◽

Selected Reaction Monitoring ◽

Reaction Monitoring ◽

Data Standard

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Automated selected reaction monitoring data analysis workflow for large-scale targeted proteomic studies

Nature Protocols ◽

10.1038/nprot.2013.091 ◽

2013 ◽

Vol 8 (8) ◽

pp. 1602-1619 ◽

Cited By ~ 49

Author(s):

Silvia Surinova ◽

Ruth Hüttenhain ◽

Ching-Yun Chang ◽

Lucia Espona ◽

Olga Vitek ◽

...

Keyword(s):

Data Analysis ◽

Large Scale ◽

Monitoring Data ◽

Selected Reaction Monitoring ◽

Reaction Monitoring ◽

Analysis Workflow

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Use of selected reaction monitoring data for label-free quantification of protein modification stoichiometry

PROTEOMICS ◽

10.1002/pmic.201000232 ◽

2010 ◽

Vol 10 (23) ◽

pp. 4301-4305 ◽

Cited By ~ 10

Author(s):

Deepa Balasubramaniam ◽

Christie L. Eissler ◽

Cynthia V. Stauffacher ◽

Mark C. Hall

Keyword(s):

Protein Modification ◽

Monitoring Data ◽

Selected Reaction Monitoring ◽

Reaction Monitoring ◽

Label Free ◽

Label Free Quantification ◽

Free Quantification

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Faculty Opinions recommendation of Multidimensional protein identification technology-selected reaction monitoring improving detection and quantification for protein biomarker studies.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.13489139.15223056 ◽

2012 ◽

Author(s):

Jin-Xiong She ◽

Wenbo Zhi

Keyword(s):

Protein Identification ◽

Selected Reaction Monitoring ◽

Reaction Monitoring ◽

Protein Biomarker ◽

Multidimensional Protein Identification Technology ◽

Detection And Quantification

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Faculty Opinions recommendation of High-throughput generation of selected reaction-monitoring assays for proteins and proteomes.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.2648956.2312054 ◽

2010 ◽

Author(s):

Jin-Xiong She ◽

Wenbo Zhi

Keyword(s):

High Throughput ◽

Selected Reaction Monitoring ◽

Reaction Monitoring

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A semi-automated mass spectrometric immunoassay coupled to selected reaction monitoring (MSIA–SRM) reveals novel relationships between circulating PCSK9 and metabolic phenotypes in patient cohorts

Methods ◽

10.1016/j.ymeth.2015.03.003 ◽

2015 ◽

Vol 81 ◽

pp. 66-73 ◽

Cited By ~ 20

Author(s):

Marie-Soleil Gauthier ◽

Joëlle R. Pérusse ◽

Zuhier Awan ◽

Annie Bouchard ◽

Sylvain Tessier ◽

...

Keyword(s):

Mass Spectrometric ◽

Selected Reaction Monitoring ◽

Reaction Monitoring ◽

Metabolic Phenotypes

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Optimisation of an HPLC selected reaction monitoring electrospray tandem mass spectrometry method for the detection of 50 arsenic species

Journal of Analytical Atomic Spectrometry ◽

10.1039/b607535e ◽

2006 ◽

Vol 21 (11) ◽

pp. 1277 ◽

Cited By ~ 41

Author(s):

Volker Nischwitz ◽

Spiros A. Pergantis

Keyword(s):

Mass Spectrometry ◽

Tandem Mass Spectrometry ◽

Arsenic Species ◽

Selected Reaction Monitoring ◽

Tandem Mass ◽

Reaction Monitoring ◽

Electrospray Tandem Mass Spectrometry ◽

Spectrometry Method ◽

Mass Spectrometry Method

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Combining selected reaction monitoring with discovery proteomics in limited biological samples

PROTEOMICS ◽

10.1002/pmic.200900310 ◽

2009 ◽

Vol 9 (21) ◽

pp. 4834-4836 ◽

Cited By ~ 13

Author(s):

Mukesh Kumar Gupta ◽

Jin Woo Jung ◽

Sang Jun Uhm ◽

Hookeun Lee ◽

Hoon Taek Lee ◽

...

Keyword(s):

Biological Samples ◽

Selected Reaction Monitoring ◽

Reaction Monitoring

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Development of protein biomarkers in cerebrospinal fluid for secondary progressive multiple sclerosis using selected reaction monitoring mass spectrometry (SRM-MS)

Clinical Proteomics ◽

10.1186/1559-0275-9-9 ◽

2012 ◽

Vol 9 (1) ◽

pp. 9 ◽

Cited By ~ 22

Author(s):

Yan Jia ◽

Tianxia Wu ◽

Christine A Jelinek ◽

Bibiana Bielekova ◽

Linda Chang ◽

...

Keyword(s):

Multiple Sclerosis ◽

Mass Spectrometry ◽

Cerebrospinal Fluid ◽

Progressive Multiple Sclerosis ◽

Secondary Progressive Multiple Sclerosis ◽

Selected Reaction Monitoring ◽

Reaction Monitoring ◽

Protein Biomarkers ◽

Secondary Progressive

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Rapid Determination of Thiourea in Waste Water by Atmospheric Pressure Chemical Ionization Tandem Mass Spectrometry Using Selected-reaction Monitoring

Rapid Communications in Mass Spectrometry ◽

10.1002/(sici)1097-0231(19970215)11:3<259::aid-rcm826>3.0.co;2-# ◽

1997 ◽

Vol 11 (3) ◽

pp. 259-264 ◽

Cited By ~ 19

Author(s):

Andrea Raffaelli ◽

Sergio Pucci ◽

Raffaello Lazzaroni ◽

Piero Salvadori

Keyword(s):

Atmospheric Pressure ◽

Chemical Ionization ◽

Atmospheric Pressure Chemical Ionization ◽

Rapid Determination ◽

Selected Reaction Monitoring ◽

Tandem Mass ◽

Reaction Monitoring ◽

Pressure Chemical Ionization ◽

Pressure Chemical

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Dynamics of absolute amount of nephrin in a single podocyte in puromycin aminonucleoside nephrosis rats calculated by quantitative glomerular proteomics approach with selected reaction monitoring mode

Nephrology Dialysis Transplantation ◽

10.1093/ndt/gfr492 ◽

2011 ◽

Vol 27 (4) ◽

pp. 1324-1330 ◽

Cited By ~ 4

Author(s):

Hirotaka Kawakami ◽

Junichi Kamiie ◽

Kyohei Yasuno ◽

Ryosuke Kobayashi ◽

Naoyuki Aihara ◽

...

Keyword(s):

Selected Reaction Monitoring ◽

Absolute Amount ◽

Reaction Monitoring ◽

Puromycin Aminonucleoside ◽

Proteomics Approach ◽

Aminonucleoside Nephrosis ◽

Puromycin Aminonucleoside Nephrosis

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