Progress in isotope tracer hydrology in Canada

2005 ◽  
Vol 19 (1) ◽  
pp. 303-327 ◽  
Author(s):  
J. J. Gibson ◽  
T. W. D. Edwards ◽  
S. J. Birks ◽  
N. A. St Amour ◽  
W. M. Buhay ◽  
...  
Keyword(s):  
Isotope Tracer ◽  
Tracer Hydrology

scholarly journals Nitrogen and oxygen availabilities control water column nitrous oxide production during seasonal anoxia in the Chesapeake Bay

2018 ◽  
Vol 15 (20) ◽  
pp. 6127-6138 ◽  
Author(s):  
Qixing Ji ◽  
Claudia Frey ◽  
Xin Sun ◽  
Melanie Jackson ◽  
Yea-Shine Lee ◽  
...  
Keyword(s):  
Nitrous Oxide ◽  
Chesapeake Bay ◽  
Water Column ◽  
N2o Emissions ◽  
N2o Production ◽  
Isotope Tracer ◽  
Relative Contribution ◽  
Environmental Controls ◽  
Long Run ◽  
Nitrate And Nitrite

Abstract. Nitrous oxide (N2O) is a greenhouse gas and an ozone depletion agent. Estuaries that are subject to seasonal anoxia are generally regarded as N2O sources. However, insufficient understanding of the environmental controls on N2O production results in large uncertainty about the estuarine contribution to the global N2O budget. Incubation experiments with nitrogen stable isotope tracer were used to investigate the geochemical factors controlling N2O production from denitrification in the Chesapeake Bay, the largest estuary in North America. The highest potential rates of water column N2O production via denitrification (7.5±1.2 nmol-N L−1 h−1) were detected during summer anoxia, during which oxidized nitrogen species (nitrate and nitrite) were absent from the water column. At the top of the anoxic layer, N2O production from denitrification was stimulated by addition of nitrate and nitrite. The relative contribution of nitrate and nitrite to N2O production was positively correlated with the ratio of nitrate to nitrite concentrations. Increased oxygen availability, up to 7 µmol L−1 oxygen, inhibited both N2O production and the reduction of nitrate to nitrite. In spring, high oxygen and low abundance of denitrifying microbes resulted in undetectable N2O production from denitrification. Thus, decreasing the nitrogen input into the Chesapeake Bay has two potential impacts on the N2O production: a lower availability of nitrogen substrates may mitigate short-term N2O emissions during summer anoxia; and, in the long-run (timescale of years), eutrophication will be alleviated and subsequent reoxygenation of the bay will further inhibit N2O production.

scholarly journals Sink or link? The bacterial role in benthic carbon cycling in the Arabian Sea's oxygen minimum zone

2013 ◽  
Vol 10 (11) ◽  
pp. 6879-6891 ◽  
Author(s):  
L. Pozzato ◽  
D. Van Oevelen ◽  
L. Moodley ◽  
K. Soetaert ◽  
J. J. Middelburg
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Particulate Organic Matter ◽  
Experimental Period ◽  
Oxygen Minimum Zone ◽  
Trophic Levels ◽  
Isotope Tracer ◽  
Oxygen Conditions ◽  
Minimum Zone ◽  
Oxygen Minimum

Abstract. The bacterial loop, the consumption of dissolved organic matter (DOM) by bacteria and subsequent transfer of bacterial carbon to higher trophic levels, plays a prominent role in pelagic food webs. However, its role in sedimentary ecosystems is not well documented. Here we present the results of isotope tracer experiments performed under in situ oxygen conditions in sediments from inside and outside the Arabian Sea's oxygen minimum zone (OMZ) to study the importance of the microbial loop in this setting. Particulate organic matter, added as phytodetritus, was processed by bacteria, protozoa and metazoans, while dissolved organic matter was processed only by bacteria and there was very little, if any, transfer to higher trophic levels within the 7 day experimental period. This lack of significant transfer of bacterial-derived carbon to metazoan consumers indicates that the bacterial loop is rather inefficient, in sediments both inside and outside the OMZ. Moreover, metazoans directly consumed labile particulate organic matter resources and thus competed with bacteria for phytodetritus.

scholarly journals Positional Enrichment by Proton Analysis (PEPA): A One-Dimensional 1 H-NMR Approach for 13 C Stable Isotope Tracer Studies in Metabolomics

2017 ◽  
Vol 56 (13) ◽  
pp. 3531-3535 ◽  
Author(s):  
Maria Vinaixa ◽  
Miguel A. Rodríguez ◽  
Suvi Aivio ◽  
Jordi Capellades ◽  
Josep Gómez ◽  
...  
Keyword(s):  
Stable Isotope ◽  
Tracer Studies ◽  
Stable Isotope Tracer ◽  
One Dimensional ◽  
Isotope Tracer ◽  
H Nmr

scholarly journals Linking Toluene Degradation with Specific Microbial Populations in Soil

1999 ◽  
Vol 65 (12) ◽  
pp. 5403-5408 ◽  
Author(s):  
Jessica R. Hanson ◽  
Jennifer L. Macalady ◽  
David Harris ◽  
Kate M. Scow
Keyword(s):  
Microbial Community ◽  
Microbial Population ◽  
Phospholipid Fatty Acid ◽  
Microbial Populations ◽  
Complex Environments ◽  
Toluene Degradation ◽  
Effective Technique ◽  
Soil Microbial ◽  
Isotope Tracer ◽  
Plfa Analysis

ABSTRACT Phospholipid fatty acid (PLFA) analysis of a soil microbial community was coupled with 13C isotope tracer analysis to measure the community’s response to addition of 35 μg of [13C]toluene ml of soil solution−1. After 119 h of incubation with toluene, 96% of the incorporated13C was detected in only 16 of the total 59 PLFAs (27%) extracted from the soil. Of the total 13C-enriched PLFAs, 85% were identical to the PLFAs contained in a toluene-metabolizing bacterium isolated from the same soil. In contrast, the majority of the soil PLFAs (91%) became labeled when the same soil was incubated with [13C]glucose. Our study showed that coupling13C tracer analysis with PLFA analysis is an effective technique for distinguishing a specific microbial population involved in metabolism of a labeled substrate in complex environments such as soil.

scholarly journals Metabolite discovery through global annotation of untargeted metabolomics data

2021 ◽  
Author(s):  
Li Chen ◽  
Wenyun Lu ◽  
Lin Wang ◽  
Xi Xing ◽  
Xin Teng ◽  
...  
Keyword(s):  
Global Optimization ◽  
High Resolution Mass Spectrometry ◽  
Mass Difference ◽  
Untargeted Metabolomics ◽  
Global Network ◽  
Optimization Approach ◽  
Metabolomics Data ◽  
Isotope Tracer ◽  
Powerful Approach ◽  
Fragmentation Patterns

AbstractA primary goal of metabolomics is to identify all biologically important metabolites. One powerful approach is liquid chromatography-high resolution mass spectrometry (LC-MS), yet most LC-MS peaks remain unidentified. Here, we present a global network optimization approach, NetID, to annotate untargeted LC-MS metabolomics data. We consider all experimentally observed ion peaks together, and assign annotations to all of them simultaneously so as to maximize a score that considers properties of peaks (known masses, retention times, MS/MS fragmentation patterns) as well network constraints that arise based on mass difference between peaks. Global optimization results in accurate peak assignment and trackable peak-peak relationships. Applying this approach to yeast and mouse data, we identify a half-dozen novel metabolites, including thiamine and taurine derivatives. Isotope tracer studies indicate active flux through these metabolites. Thus, NetID applies existing metabolomic knowledge and global optimization to annotate untargeted metabolomics data, revealing novel metabolites.

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