scholarly journals Improved dynamic connection detection power in estimated dynamic functional connectivity considering multivariate dependencies between brain regions

2020 ◽  
Vol 41 (15) ◽  
pp. 4264-4287 ◽  
Author(s):  
Somayeh Maleki Balajoo ◽  
Davud Asemani ◽  
Ali Khadem ◽  
Hamid Soltanian‐Zadeh
Keyword(s):  
Functional Connectivity ◽  
Brain Regions ◽  
Dynamic Functional Connectivity ◽  
Detection Power

scholarly journals A Novel Unit-Based Personalized Fingerprint Feature Selection Strategy for Dynamic Functional Connectivity Networks

2021 ◽  
Vol 15 ◽  
Author(s):  
Feng Zhao ◽  
Zhiyuan Chen ◽  
Islem Rekik ◽  
Peiqiang Liu ◽  
Ning Mao ◽  
...  
Keyword(s):  
Feature Selection ◽  
Functional Connectivity ◽  
Evaluation Method ◽  
Brain Regions ◽  
Autism Spectrum ◽  
Superior Performance ◽  
Selection Strategy ◽  
Dynamic Functional Connectivity ◽  
Discriminative Feature ◽  
Fingerprint Feature

The sliding-window-based dynamic functional connectivity networks (SW-D-FCN) derive from resting-state functional Magnetic Resonance Imaging has become an increasingly useful tool in the diagnosis of various neurodegenerative diseases. However, it is still challenging to learn how to extract and select the most discriminative features from SW-D-FCN. Conventionally, existing methods opt to select a single discriminative feature set or concatenate a few more from the SW-D-FCN. However, such reductionist strategies may fail to fully capture the personalized discriminative characteristics contained in each functional connectivity (FC) sequence of the SW-D-FCN. To address this issue, we propose a unit-based personalized fingerprint feature selection (UPFFS) strategy to better capture the most discriminative feature associated with a target disease for each unit. Specifically, we regard the FC sequence between any pair of brain regions of interest (ROIs) is regarded as a unit. For each unit, the most discriminative feature is identified by a specific feature evaluation method and all the most discriminative features are then concatenated together as a feature set for the subsequent classification task. In such a way, the personalized fingerprint feature derived from each FC sequence can be fully mined and utilized in classification decision. To illustrate the effectiveness of the proposed strategy, we conduct experiments to distinguish subjects diagnosed with autism spectrum disorder from normal controls. Experimental results show that the proposed strategy can select relevant discriminative features and achieve superior performance to benchmark methods.

scholarly journals Beyond linear dynamic functional connectivity: a vine copula change point model

2021 ◽  
Author(s):  
Xin Xiong ◽  
Ivor Cribben
Keyword(s):  
Functional Connectivity ◽  
Change Point ◽  
Sliding Window ◽  
Brain Regions ◽  
Change Points ◽  
Fmri Data ◽  
Data Sets ◽  
Dynamic Functional Connectivity ◽  
Vine Copula ◽  
Vine Copulas

To estimate dynamic functional connectivity for functional magnetic resonance imaging (fMRI) data, two approaches have dominated: sliding window and change point methods. While computationally feasible, the sliding window approach has several limitations. In addition, the existing change point methods assume a Gaussian distribution for and linear dependencies between the fMRI time series. In this work, we introduce a new methodology called Vine Copula Change Point (VCCP) to estimate change points in the functional connectivity network structure between brain regions. It uses vine copulas, various state-of-the-art segmentation methods to identify multiple change points, and a likelihood ratio test or the stationary bootstrap for inference. The vine copulas allow for various forms of dependence between brain regions including tail, symmetric and asymmetric dependence, which has not been explored before in the analysis of neuroimaging data. We apply VCCP to various simulation data sets and to two fMRI data sets: a reading task and an anxiety inducing experiment. In particular, for the former data set, we illustrate the complexity of textual changes during the reading of Chapter 9 in Harry Potter and the Sorcerer's Stone and find that change points across subjects are related to changes in more than one type of textual attributes. Further, the graphs created by the vine copulas indicate the importance of working beyond Gaussianity and linear dependence. Finally, the R package vccp implementing the methodology from the paper is available from CRAN.

scholarly journals Nuisance Effects and the Limitations of Nuisance Regression in Dynamic Functional Connectivity fMRI

2018 ◽  
Author(s):  
Alican Nalci ◽  
Bhaskar D. Rao ◽  
Thomas T. Liu
Keyword(s):  
Functional Connectivity ◽  
Resting State Fmri ◽  
Brain Regions ◽  
Blood Oxygenation ◽  
Dynamic Functional Connectivity ◽  
Temporal Fluctuations ◽  
Before And After ◽  
The Difference ◽  
Time Courses ◽  
The Relationship

AbstractIn resting-state fMRI, dynamic functional connectivity (DFC) measures are used to characterize temporal changes in the brain’s intrinsic functional connectivity. A widely used approach for DFC estimation is the computation of the sliding window correlation between blood oxygenation level dependent (BOLD) signals from different brain regions. Although the source of temporal fluctuations in DFC estimates remains largely unknown, there is growing evidence that they may reflect dynamic shifts between functional brain networks. At the same time, recent findings suggest that DFC estimates might be prone to the influence of nuisance factors such as the physiological modulation of the BOLD signal. Therefore, nuisance regression is used in many DFC studies to regress out the effects of nuisance terms prior to the computation of DFC estimates. In this work we examined the relationship between DFC estimates and nuisance factors. We found that DFC estimates were significantly correlated with temporal fluctuations in the magnitude (norm) of various nuisance regressors, with significant correlations observed in the majority (76%) of the cases examined. Significant correlations between the DFC estimates and nuisance regressor norms were found even when the underlying correlations between the nuisance and fMRI time courses were relatively small. We then show that nuisance regression does not eliminate the relationship between DFC estimates and nuisance norms, with significant correlations observed in the majority (71%) of the cases examined after nuisance regression. We present theoretical bounds on the difference between DFC estimates obtained before and after nuisance regression and relate these bounds to limitations in the efficacy of nuisance regression with regards to DFC estimates.

scholarly journals Multifractal and entropy analysis of resting-state electroencephalography reveals spatial organization in local dynamic functional connectivity

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Frigyes Samuel Racz ◽  
Orestis Stylianou ◽  
Peter Mukli ◽  
Andras Eke
Keyword(s):  
Functional Connectivity ◽  
Resting State ◽  
Spatial Organization ◽  
Brain Activity ◽  
Surrogate Data ◽  
Brain Regions ◽  
Local Dynamic ◽  
Dynamic Functional Connectivity ◽  
Multifractal Scaling ◽  
The Brain

Abstract Functional connectivity of the brain fluctuates even in resting-state condition. It has been reported recently that fluctuations of global functional network topology and those of individual connections between brain regions expressed multifractal scaling. To expand on these findings, in this study we investigated if multifractality was indeed an inherent property of dynamic functional connectivity (DFC) on the regional level as well. Furthermore, we explored if local DFC showed region-specific differences in its multifractal and entropy-related features. DFC analyses were performed on 62-channel, resting-state electroencephalography recordings of twelve young, healthy subjects. Surrogate data testing verified the true multifractal nature of regional DFC that could be attributed to the presumed nonlinear nature of the underlying processes. Moreover, we found a characteristic spatial distribution of local connectivity dynamics, in that frontal and occipital regions showed stronger long-range correlation and higher degree of multifractality, whereas the highest values of entropy were found over the central and temporal regions. The revealed topology reflected well the underlying resting-state network organization of the brain. The presented results and the proposed analysis framework could improve our understanding on how resting-state brain activity is spatio-temporally organized and may provide potential biomarkers for future clinical research.

scholarly journals Overlaps in Brain Dynamic Functional Connectivity between Schizophrenia and Autism Spectrum Disorder

2018 ◽  
Author(s):  
Andry Andriamananjara ◽  
Rayan Muntari ◽  
Alessandro Crimi
Keyword(s):  
Functional Connectivity ◽  
Brain Regions ◽  
Autism Spectrum ◽  
Machine Learning Techniques ◽  
Imaging Biomarkers ◽  
Dynamic Functional Connectivity ◽  
Direct Reports ◽  
Functional Flexibility ◽  
Learning Techniques ◽  
Window Technique

AbstractSchizophrenia and autism share some genotipic and phenotypic aspects as connectome miswiring and common cognitive deficits. Currently, there are no medical tests available for either disorders, and diagnostics for both of them include direct reports of relatives and clinical evaluation by a psychiatrist. Despite several medical imaging biomarkers have been proposed in the past, novel effective biomarkers or improvements of the existing ones is still need. This work proposes a dynamic functional connectome analysis combined with machine learning techniques to complement the present diagnostic procedure. We used the moving window technique to locate a set of dynamic functional connectivity states, and then use them as features to classify subjects as autism/schizophrenia or control. Moreover, by using dynamic functional connectivity measures we investigate the question whether those two disorders overlap, namely whether schizophrenia is part of the autism spectrum and which brain region could be involved in both disorders. The results reveal that both static and dynamic functional connectivity can be used to classify subjects with schizophrenia or autism. Lastly, some brain regions show similar functional flexibility in both autism and schizophrenia cohorts giving further possible proofs of their overlaps.

States of Mind: Characterizing the Neural Bases of Focus and Mind-wandering through Dynamic Functional Connectivity

2017 ◽  
Vol 29 (3) ◽  
pp. 495-506 ◽  
Author(s):  
Benjamin W. Mooneyham ◽  
Michael D. Mrazek ◽  
Alissa J. Mrazek ◽  
Kaita L. Mrazek ◽  
Dawa T. Phillips ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Mind Wandering ◽  
Mental States ◽  
Brain Regions ◽  
Focused Attention ◽  
Supporting Evidence ◽  
Dispositional Mindfulness ◽  
Dynamic Functional Connectivity ◽  
Brain States ◽  
The Mind

During tasks that require continuous engagement, the mind alternates between mental states of focused attention and mind-wandering. Existing research has assessed the functional connectivity of intrinsic brain networks underlying the experience and training of these mental states using “static” approaches that assess connectivity across an entire task. To disentangle the different functional connectivity between brain regions that occur as the mind fluctuates between discrete brain states, we employed a dynamic functional connectivity approach that characterized brain activity using a sliding window. This approach identified distinct states of functional connectivity between regions of the executive control, salience, and default networks during a task requiring sustained attention to the sensations of breathing. The frequency of these distinct brain states demonstrated opposing correlations with dispositional mindfulness, suggesting a correspondence to the mental states of focused attention and mind-wandering. We then determined that an intervention emphasizing the cultivation of mindfulness increased the frequency of the state that had been associated with a greater propensity for focused attention, especially for those who improved most in dispositional mindfulness. These findings provide supporting evidence that mind-wandering involves the corecruitment of brain regions within the executive and default networks. More generally, this work illustrates how emerging neuroimaging methods may allow for the characterization of discrete brain states based on patterns of functional connectivity even when external indications of these states are difficult or impossible to measure.

scholarly journals Dissecting Static and Dynamic Functional Connectivity: Example From the Autism Spectrum

2019 ◽  
Vol 13 ◽  
pp. 117906951985180 ◽  
Author(s):  
Tonya White ◽  
Vince D. Calhoun
Keyword(s):  
Functional Connectivity ◽  
Brain Connectivity ◽  
Brain Regions ◽  
Autism Spectrum ◽  
Dynamic Functional Connectivity ◽  
Age Related ◽  
Autistic Symptoms ◽  
Magnetic Resonance Imaging Mri ◽  
Dynamic Measures ◽  
The Brain

The ability to measure the intrinsic functional architecture of the brain has grown exponentially over the last 2 decades. Measures of intrinsic connectivity within the brain, typically measured using resting-state functional magnetic resonance imaging (MRI), have evolved from primarily “static” approaches, to include dynamic measures of functional connectivity. Measures of dynamic functional connectivity expand the assumptions to allow brain regions to have temporally different patterns of communication between different regions. That is, connections within the brain can differentially fire between different regions at different times, and these differences can be quantified. Applying approaches that measure the dynamic characteristics of functional brain connectivity have been fruitful in identifying differences during brain development and psychopathology. We provide a brief overview of static and dynamic measures of functional connectivity and illustrate the synergy in applying these approaches to identify both age-related differences in children and differences between typically developing children and children with autistic symptoms.

scholarly journals Exploring Anti-correlated Resting State BOLD Signals Through Dynamic Functional Connectivity and Whole-brain Computational Modeling

2016 ◽  
Author(s):  
Murat Demirtaş ◽  
Matthieu Gilson ◽  
John D. Murray ◽  
Dina Popovic ◽  
Eduard Vieta ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Computational Modeling ◽  
Resting State ◽  
Brain Connectivity ◽  
Brain Regions ◽  
Hemodynamic Response Function ◽  
Dynamic Functional Connectivity ◽  
Whole Brain ◽  
Global Average ◽  
Functional Connections

AbstractResting-state functional magnetic resonance imaging and diffusion weight imaging became a conventional tool to study brain connectivity in healthy and diseased individuals. However, both techniques provide indirect measures of brain connectivity leading to controversies on their interpretation. Among these controversies, interpretation of anti-correlated functional connections and global average signal is a major challenge for the field. In this paper, we used dynamic functional connectivity to calculate the probability of anti-correlations between brain regions. The brain regions forming task-positive and task-negative networks showed high anti-correlation probabilities. The fluctuations in anti-correlation probabilities were significantly correlated with those in global average signal and functional connectivity. We investigated the mechanisms behind these fluctuations using whole-brain computational modeling approach. We found that the underlying effective connectivity and intrinsic noise reflect the static spatiotemporal patterns, whereas the hemodynamic response function is the key factor defining the fluctuations in functional connectivity and anti-correlations. Furthermore, we illustrated the clinical implications of these findings on a group of bipolar disorder patients suffering a depressive relapse (BPD).

Engaging regularly with fiction influences connectivity in cortical areas for language and mentalizing

2017 ◽  
Author(s):  
Roel M. Willems ◽  
Franziska Hartung
Keyword(s):  
Functional Connectivity ◽  
Time Course ◽  
Language Skills ◽  
Brain Regions ◽  
Brain Areas ◽  
Daily Lives ◽  
Cortical Areas ◽  
Social Abilities ◽  
Behavioral Evidence ◽  
Amount Of Reading

Behavioral evidence suggests that engaging with fiction is positively correlated with social abilities. The rationale behind this link is that engaging with fictional narratives offers a ‘training modus’ for mentalizing and empathizing. We investigated the influence of the amount of reading that participants report doing in their daily lives, on connections between brain areas while they listened to literary narratives. Participants (N=57) listened to two literary narratives while brain activation was measured with fMRI. We computed time-course correlations between brain regions, and compared the correlation values from listening to narratives to listening to reversed speech. The between-region correlations were then related to the amount of fiction that participants read in their daily lives. Our results show that amount of fiction reading is related to functional connectivity in areas known to be involved in language and mentalizing. This suggests that reading fiction influences social cognition as well as language skills.

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