Competitive Assay for Theophylline Based on an Abasic Site-Containing DNA Duplex Aptamer and a Fluorescent Ligand

2012 ◽  
Vol 18 (40) ◽  
pp. 12719-12724 ◽  
Author(s):  
Yusuke Sato ◽  
Yushuang Zhang ◽  
Seiichi Nishizawa ◽  
Takehiro Seino ◽  
Kodai Nakamura ◽  
...  
Keyword(s):  
Abasic Site ◽  
Dna Duplex ◽  
Competitive Assay ◽  
Fluorescent Ligand

Search for DNA Repair Inhibitors:  Selective Binding of Nucleic Bases−Acridine Conjugates to a DNA Duplex Containing an Abasic Site†

1997 ◽  
Vol 40 (21) ◽  
pp. 3346-3352 ◽  
Author(s):  
Nathalie Berthet ◽  
Jean-François Constant ◽  
Martine Demeunynck ◽  
Pierre Michon ◽  
Jean Lhomme
Keyword(s):  
Dna Repair ◽  
Abasic Site ◽  
Dna Duplex ◽  
Selective Binding ◽  
Nucleic Bases ◽  
Dna Repair Inhibitors

Specific Recognition and Stabilization of an Abasic Site-Containing DNA Duplex by a Macrocyclic Bisacridine

1999 ◽  
Vol 18 (6-7) ◽  
pp. 1351-1353 ◽  
Author(s):  
M. P. Teulade-Fichou ◽  
J. P. Vigneron ◽  
J. M. Lehn ◽  
N. Berthet ◽  
J. Michon ◽  
...  
Keyword(s):  
Abasic Site ◽  
Dna Duplex ◽  
Specific Recognition

Interaction of a Spin-Labeled Adenine−Acridine Conjugate with a DNA Duplex Containing an Abasic Site Model†

Biochemistry ◽  
1999 ◽  
Vol 38 (6) ◽  
pp. 1930-1937 ◽  
Author(s):  
Fabrice Thomas ◽  
Josette Michon ◽  
Jean Lhomme
Keyword(s):  
Abasic Site ◽  
Dna Duplex ◽  
Site Model

Structural features of an exocyclic adduct positioned opposite an abasic site in a DNA duplex

Biochemistry ◽  
1991 ◽  
Vol 30 (13) ◽  
pp. 3262-3270 ◽  
Author(s):  
Michael Kouchakdjian ◽  
Moises Eisenberg ◽  
Francis Johnson ◽  
Arthur P. Grollman ◽  
Dinshaw J. Patel
Keyword(s):  
Structural Features ◽  
Abasic Site ◽  
Dna Duplex

Label-free aptamer-based sensor using abasic site-containing DNA and a nucleobase-specific fluorescent ligand

2009 ◽  
pp. 6445 ◽  
Author(s):  
Zhiai Xu ◽  
Kotaro Morita ◽  
Yusuke Sato ◽  
Qing Dai ◽  
Seiichi Nishizawa ◽  
...  
Keyword(s):  
Label Free ◽  
Abasic Site ◽  
Fluorescent Ligand

NMR and Molecular Modeling Studies of the Interaction of Artificial AP Lyases with a DNA Duplex Containing an Apurinic Abasic Site Model†

Biochemistry ◽  
1997 ◽  
Vol 36 (16) ◽  
pp. 4831-4843 ◽  
Author(s):  
Yannick Coppel ◽  
Jean-François Constant ◽  
Christian Coulombeau ◽  
Martine Demeunynck ◽  
Julian Garcia ◽  
...  
Keyword(s):  
Molecular Modeling ◽  
Abasic Site ◽  
Dna Duplex ◽  
Site Model ◽  
Modeling Studies ◽  
Molecular Modeling Studies

Enhancement in fluorescence response by a quencher for amiloride upon binding to thymine opposite an abasic site in a DNA duplex

2010 ◽  
Vol 675 (1) ◽  
pp. 49-52 ◽  
Author(s):  
Yusuke Sato ◽  
Jing Tian ◽  
Toshiki Ichihashi ◽  
Yuka Chinda ◽  
Zhiai Xu ◽  
...  
Keyword(s):  
Abasic Site ◽  
Dna Duplex ◽  
Fluorescence Response

Rational design of a reversible Mg2+/EDTA-controlled molecular switch based on a DNA minidumbbell

2020 ◽  
Vol 56 (70) ◽  
pp. 10127-10130
Author(s):  
Liqi Wan ◽  
Sik Lok Lam ◽  
Hung Kay Lee ◽  
Pei Guo
Keyword(s):  
Rational Design ◽  
Molecular Switch ◽  
Abasic Site ◽  
Dna Duplex ◽  
Duplex Formation

The minidumbbell containing an abasic site is used to construct a Mg2+/EDTA-controlled molecular switch for regulating DNA duplex formation and dissociation instantly and reversibly.

Triplex-forming oligonucleotide as a lighting-up switch for a DNA abasic site-binding fluorescent ligand

2018 ◽  
Vol 198 ◽  
pp. 193-197 ◽  
Author(s):  
Ziyue Ni ◽  
Ting Ye ◽  
Yali Yu ◽  
Longlong Gao ◽  
Yifan Fei ◽  
...  
Keyword(s):  
Abasic Site ◽  
Triplex Forming Oligonucleotide ◽  
Site Binding ◽  
Fluorescent Ligand

Unnatural triazolyl nucleoside stabilizes an abasic site containing DNA duplex equally as the stabilization of a natural A–T pair

RSC Advances ◽  
2013 ◽  
Vol 3 (44) ◽  
pp. 21352 ◽  
Author(s):  
Subhendu Sekhar Bag ◽  
Rajen Kundu ◽  
Sangita Talukdar
Keyword(s):  
Abasic Site ◽  
Dna Duplex
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