scholarly journals Development and characterization of genomic SSR markers for Tamarix chinensis (Tamaricaceae)

2019 ◽  
Vol 7 (2) ◽  
pp. e01219 ◽  
Author(s):  
Ruhua Zhang ◽  
Qiang Wen ◽  
Li-an Xu
Keyword(s):  
Ssr Markers ◽  
Tamarix Chinensis ◽  
Genomic Ssr

Development and characterization of 53 polymorphic genomic-SSR markers in Siberian wildrye (Elymus sibiricus L.)

2014 ◽  
Vol 6 (4) ◽  
pp. 861-864 ◽  
Author(s):  
Yunting Lei ◽  
Yanyan Zhao ◽  
Feng Yu ◽  
Yuan Li ◽  
Quanwen Dou
Keyword(s):  
Ssr Markers ◽  
Elymus Sibiricus ◽  
Genomic Ssr

scholarly journals Characterization of EST-SSR and genomic-SSR markers in the clam, Meretrix meretrix

2011 ◽  
Vol 3 (4) ◽  
pp. 655-658 ◽  
Author(s):  
Xia Lu ◽  
Hongxia Wang ◽  
Ping Dai ◽  
Baozhong Liu
Keyword(s):  
Ssr Markers ◽  
Meretrix Meretrix ◽  
Genomic Ssr

scholarly journals Development and Characterization of Polymorphic EST-SSR and Genomic SSR Markers for Tibetan Annual Wild Barley

PLoS ONE ◽  
2014 ◽  
Vol 9 (4) ◽  
pp. e94881 ◽  
Author(s):  
Mian Zhang ◽  
Weihua Mao ◽  
Guoping Zhang ◽  
Feibo Wu
Keyword(s):  
Ssr Markers ◽  
Wild Barley ◽  
Genomic Ssr

scholarly journals Development and Characterization of Genomic SSR Markers for Anneslea fragrans (Pentaphylacaceae)

2017 ◽  
Vol 5 (10) ◽  
pp. 1700086
Author(s):  
Lijing Sun ◽  
Kaikai Meng ◽  
Boyong Liao ◽  
Chunmei Li ◽  
Yue Zhang ◽  
...  
Keyword(s):  
Ssr Markers ◽  
Genomic Ssr

Development and characterization of genomic SSR markers in Cynodon transvaalensis Burtt-Davy

2014 ◽  
Vol 289 (4) ◽  
pp. 523-531 ◽  
Author(s):  
Chengcheng Tan ◽  
Yanqi Wu ◽  
Charles M. Taliaferro ◽  
Greg E. Bell ◽  
Dennis L. Martin ◽  
...  
Keyword(s):  
Ssr Markers ◽  
Genomic Ssr ◽  
Cynodon Transvaalensis

Development and characterization of polymorphic genomic-SSR markers in Asian long-horned beetle (Anoplophora glabripennis)

2017 ◽  
Vol 107 (6) ◽  
pp. 749-755 ◽  
Author(s):  
Zhaoyang Liu ◽  
Jing Tao ◽  
Youqing Luo
Keyword(s):  
Ssr Markers ◽  
Environmental Concern ◽  
Anoplophora Glabripennis ◽  
Whole Genome ◽  
Genomic Ssr ◽  
Ssr Loci ◽  
Horned Beetle ◽  
Basic Characteristics ◽  
Wood Borer

AbstractThe Asian long-horned beetle (ALB), Anoplophora glabripennis (Motschulsky) (Coleoptera: Cerambycidae: Lamiinae), is a wood-borer and polyphagous xylophage that is native to Asia. It infests and seriously harms healthy trees, and therefore is a cause for considerable environmental concern. The analysis of population genetic structure of ALB and sibling species Anoplophora nobilis (Ganglbauer) will not only help to clarify the relationship between environmental variables and mechanisms of speciation, but also will enhance our understanding of evolutionary processes. However, the known genetic markers, particularly microsatellites, are limited for this species. SSRLocator software was used to analyze the distribution and frequencies of genomic simple sequence repeat (SSR), to infer the basic characteristics of repeat motifs, and to design primers. We developed SSR loci of 2–6 repeated units, including 10,650 perfect SSRs, and found 140 types of repeat motifs. A total of 2621 SSR markers were discovered in ALB whole-genome shotgun sequences. 48 pairs of SSR primers were randomly chosen from 2621 SSR markers, and half of these 48 pairs were polymorphic containing 4 di-, 7 tri-, 2 tetra-, and 11-hexamer SSRs. Four populations test the effectiveness of the primers. These results suggest that our method for whole-genome SSR screening is feasible and efficient, and the SSR markers developed in this study are suitable for further population genetics studies of ALB. Moreover, they may also be useful for the development of SSRs for other Coleoptera.

scholarly journals Development of Genomic SSR Markers and Molecular Characterization of Magnaporthe oryzae Isolates from Wheat in Brazil

2013 ◽  
Vol 52 (1-2) ◽  
pp. 52-70 ◽  
Author(s):  
Jorge Fernando Pereira ◽  
Luciano Consoli ◽  
Estevon Alexandre de Souza Bombonatto ◽  
Ana Lídia Variani Bonato ◽  
João Leodato Nunes Maciel
Keyword(s):  
Molecular Characterization ◽  
Ssr Markers ◽  
Magnaporthe Oryzae ◽  
Genomic Ssr
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